Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00288 ATGCCTTTGAAAATGGATCCTAATTTCAACTCCAGTTTCCTCAATGGATTTAGATTCAACCAAGTTCCCACTATCCCCAATGTAGAGGAACAGTGCCCTGATCCTGTAAATGGGTTGGAAACCATGAACTTTGGATTCATGAATGACCCTTTTCTTCTTCCACCTGATCAAAACAATTCTCAAAATCCTACTTCTTCTATTTCCACCATTACTGCAGATGAAGATTCTCCCTTGGATGACACCGATTTCTCTGCAACCGTACTACGATACATAAACCAGATGCTTATGGAAGAGGACATGGAGGAGAAGCCTTGTATGTTCCATGATTCATTGGCTTTACAAGCTGCTGAGAAATCATTGTATGATGCCATTGGTGGGACATACCCTCATCTTCCTCCTCATCCTCTTTCTTCTTCCATACAGCATCAAGCTCAAAACTACCACAATGTTGAAAGCCCTGATGATAGCCTCTCTAGTAACTTCAGTAGTTATAGTAGCGGCCTCAGCACCATTAGTACTAGCAACTTGGTTGAGTCACATTGGAGCAACTTTGACCCTTCAGAGTATAAGCCTTCTATACTACAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGAGTTCGAACCCCGGCACACAGTCTTCCACGAACAATAGAAATAGCTTTACTACAGCCAACAATGGTGGTGGATTGTTGGGGAGTTCAGGTGCTGGATTTTTCGATTCATCATTTCTGAGCAAAAGTGAGTCCATGCTGCAGTTTAAGAGGGGAATGGAGGAAGCCAGTAAGTTTCTTCCTAAGGGGAATCCACTGGTTATTGACTTGGAGAATAGCACCTTTAACCCTTCTTTTCAAAAGGCTCCTCAGCATGTGGACATTAAGGAGGAGAGAGATGAAAGGGAGTATTTTTCTGGTGAGTCAAAAGGGAGAAAGAATCACGAGCGGGAAGATCAAGTGGAATTACAAGATGGGAGGAGCAACAAACAGTCTGCGATTTACAGGGAAGACAGTGAGCTATCAGAATTGTTTGATAAAATACTGCTCGGCACAGGGTGTGGAAAAGAGGCACCTCCCAGATGCATTTGTGACGAAGACAAACCTAATGGGCAAGACAAGAATGTGCAGCAAAAGGAAGAAACAAACAAGTTTAGCAGTGGAAAGAATCGTGTTAAGAAACAAGGTAATAAGAAGGGAGTTGTTGATCTGAGGACCCTATTGGTTCTGTGCGCACAAGCTGTTTCATCTGATGATCATTCAACTGCTAATGAGTTATTGAAGCAGATTAGACAGCACTCTTCACGTCTAGGTGATGGGTCTCAGAGGCTGGCACATTGTTTTGCAAATGCCCTTGAAGCACGCTTGGCCGGCTCTGGCACCCAGCTATACACTTCTCTGACCTCCAAAAGAAAATCTGCTGCAGATATGGTGAAAGCATATCAAATGTTTATATCAGCCTGCCCATTCAAGAAGCTTGCTATCATTTTTGCTAACCATACAATTCTGAACCTACCCAAGCCCAAGGAAGTGGAAACTCTTCATATTGTTGATTTTGGTATCCGTTACGGCTTCCAGTGGCCTGCCCTTATTTTTCGTCTATCAAATAGACCTGGTGGTCCTCGCAAGCTGCGCATAACAGGGATCGAGCTTCCACAACCAGGTTTCAGGCCAGCAGAGAGAGTCCAGGAGACAGGGCGTCGCCTAGCTAAGTATTGTGAACGCTTTAATGTTCCTTTTGAGTTCAATGCTATTGCACAGAAATGGGAAACCATCAAAATTGAGGACCTGAAGATAAAAGAAAATGAACTTCTTGCAGTGAATTGTATGGTTCGGTTTAAGAATCTACTTGATGAGACTGTTGTGTTGAATAGTCCAAGGGATGCTGTCTTGAAATTAATTAGGAAGGCCAATCCTAATATATTTATACACGCTACTGTCAATGGGAACTACAATGCCCCATTCTTTGTGACACGGTTCCGGGAGGCTCTTTTTCATTACTCTACATTGTTTGATGTGCTTGACACCAATGTTGATCGCGAAGATCCAATGAGGTTGATGTTTGAGGAGGAGTTCTTTGGCAGGGAGGTAGTGAATATTATAGCTTGTGAGGGTTCTGAGAGGGTTGAGCGACCCGAAACATACAAGCAATGGCAGGTTCGGAATACAAGGGCAGGGTTTAGGCAACTCCCCTTGGATGACCACCTCATTCACAAACTAAGATGTAAACTGAAAGATGTGTACCATGGTGATTTCATGCTTGATGTGGATGGCAACTACATGCTTCAAAGTTGGAAGGGCCGAATCATTTATGCTTCCTCTTGTTGGATACCAGCATAG 2337 0.4296 MPLKMDPNFNSSFLNGFRFNQVPTIPNVEEQCPDPVNGLETMNFGFMNDPFLLPPDQNNSQNPTSSISTITADEDSPLDDTDFSATVLRYINQMLMEEDMEEKPCMFHDSLALQAAEKSLYDAIGGTYPHLPPHPLSSSIQHQAQNYHNVESPDDSLSSNFSSYSSGLSTISTSNLVESHWSNFDPSEYKPSILQXXXXXXXXXXXASSNPGTQSSTNNRNSFTTANNGGGLLGSSGAGFFDSSFLSKSESMLQFKRGMEEASKFLPKGNPLVIDLENSTFNPSFQKAPQHVDIKEERDEREYFSGESKGRKNHEREDQVELQDGRSNKQSAIYREDSELSELFDKILLGTGCGKEAPPRCICDEDKPNGQDKNVQQKEETNKFSSGKNRVKKQGNKKGVVDLRTLLVLCAQAVSSDDHSTANELLKQIRQHSSRLGDGSQRLAHCFANALEARLAGSGTQLYTSLTSKRKSAADMVKAYQMFISACPFKKLAIIFANHTILNLPKPKEVETLHIVDFGIRYGFQWPALIFRLSNRPGGPRKLRITGIELPQPGFRPAERVQETGRRLAKYCERFNVPFEFNAIAQKWETIKIEDLKIKENELLAVNCMVRFKNLLDETVVLNSPRDAVLKLIRKANPNIFIHATVNGNYNAPFFVTRFREALFHYSTLFDVLDTNVDREDPMRLMFEEEFFGREVVNIIACEGSERVERPETYKQWQVRNTRAGFRQLPLDDHLIHKLRCKLKDVYHGDFMLDVDGNYMLQSWKGRIIYASSCWIPA 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00288 778 Pfam GRAS domain family 403 775 IPR005202 -
Adu03g00288 778 MobiDBLite consensus disorder prediction 207 229 - -
Adu03g00288 778 MobiDBLite consensus disorder prediction 359 395 - -
Adu03g00288 778 ProSiteProfiles GRAS family profile. 394 776 IPR005202 -
Adu03g00288 778 MobiDBLite consensus disorder prediction 134 159 - -
Adu03g00288 778 PANTHER SCARECROW-LIKE PROTEIN 14 58 777 - -
Adu03g00288 778 MobiDBLite consensus disorder prediction 359 387 - -
Adu03g00288 778 MobiDBLite consensus disorder prediction 200 229 - -
Adu03g00288 778 MobiDBLite consensus disorder prediction 282 334 - -
Adu03g00288 778 MobiDBLite consensus disorder prediction 50 78 - -
Adu03g00288 778 MobiDBLite consensus disorder prediction 53 74 - -
Adu03g00288 778 MobiDBLite consensus disorder prediction 124 159 - -
Adu03g00288 778 MobiDBLite consensus disorder prediction 290 334 - -
Adu03g00288 778 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 58 777 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00288 Adu-Chr3 2641593 2644919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00288 87 778 GRAS Transcription Factor Family AT1G07530 54.161 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Adu03g00288 GRAS 1.4e-113 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00288 - - ahf:112736647 1458.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01229 08 21364050 21366866 Adu03g00288 03 2641593 2644919 PCT
Adu03g00288 03 2641593 2644919 Adu08g01230 08 21381640 21383592 PCT