Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00269 ATGGTTCTTGAGAGGGACCAAATTATGACTAAGTTCTATGAGGTCTCGGCTAGGTTGGAGCAGTCTTTGGCGGCGGTTTCATGTGATCAACTCGACATTTCAGATGAAGTTAAGGAGCAGGTTGAGCTAGTTCTTGCTCAGTTCAGAAGAGCAAAAGGGAGGGTTGATGAACCTGATACCAAGTTGTATGAGGATGTGTTGTCCCTCTATAACAATAACACTGATGTAGCTACCAATCCAGATGTTTTTCGGCAGTTAGCAGAGAAGTTGGAATTGATGGGAATAACTGATCTCACACAAGAGTCACTTGCCCTGCACGAGATGGTGGCCGTAAGTGGTGGCGATCCGGCCGGACGCATTGAGAAGATGTCCATGCTATTGAAGAAGATAAAAGATTATGTTCAAACTGAAAATCTAGTTGTGTATGATACTGTAGGAGGAAAGGGCCATTCTTCAAAAACCAGCAAACAAGTCTCAAATGAAAGGAATCATCAGACGCCTGTTATCCCTGATGATTTTCGATGTCCTGTTTCTCTTGAATTGATGAAGGATCCTGTCATTGTTTCAACAGGACAGACTTATGACCGTTCTTCTATTGAGAAGTGGTTAGAAGCAGGGCATGGTACATGCCCAAAAACACAGCAGAGCCTCACTAGTACCGTCCTCACACCCAACTATGTCTTGCGAAGCCTCATAGAACAATGGTGCGAAGCAAATGGCATGGAACCACCGAGACGACCAAGCAATTCCGAACCTAGTAAATCAGTGTCGGCTTATGCCCCGGCCGAACGAAGCAAGATTGAAACTCTTCTCCAAAGGCTGACTTGTGGCAGTCCAGAAGAGCGAAGAACAGCTGCAGGGGAGATCCGGCTTCTTGCAAAGCGCAATGCAGATAACCGTGTGGCCATTGCAGAAGCCGGTGCAATACCTCTCCTTGTTGGTCTCCTCTCTGTGCCTGATTCCCGCACTCAAGAGAATGCTGTTACCGCACTTCTGAATCTTTCTATATATGAAAACAACAAAGGAAGCATTGTATCTTCAGGGGCAATTCCAGGCATAGTTCATGTGCTCAAGAAGGGAAGCATGGAAGCTCGAGAAAATGCAGCAGCAACACTTTTCAGCCTATCAGTTATTGATGAAAACAAGGTTACAATTGGTGCTTCAGGAGCCATACCTCCATTAGTAACACTTCTAAGTGAGGGTACTCAGAGGGGTAAGAAAGATGCTGCAACAGCACTCTTTAATCTATGCATTTATCAAGGGAACAAGGGAAAGGCAATCAGGGCCGGTGCCATTCCCACATTGATGAAACTTGTAACAGAACCCAATGGAAGCATGGTGGATGAAGCGTTGGCCATTTTGGCAATATTGTCTAGCCATCCTGATGGAAAGGCTGCCATTGGTGCTGCAGAGGCAGTGCCCTTTTTGGTACAGTTTATTGCAAATGGTTCACCCAGGAACAAAGAAAATGCGGCTGCTGTCTTGGTTCATCTTTCTTCTGGAGATCAACAATATCTGGCTCAGGCCCGAGAGCTCGGCGTGATGGATCCTTTGTTGGATTTGGCTCAAAATGGCACAGATAGAGGAAAAAGGAAGGCAGCACAATTGCTAGAACGCATGAGCAGGTTCCTTGAGCAGCAGAGTCAAAATGAACTGAACCATGTTGCACATACCAGCATTGATAATACCTAA 1692 0.458 MVLERDQIMTKFYEVSARLEQSLAAVSCDQLDISDEVKEQVELVLAQFRRAKGRVDEPDTKLYEDVLSLYNNNTDVATNPDVFRQLAEKLELMGITDLTQESLALHEMVAVSGGDPAGRIEKMSMLLKKIKDYVQTENLVVYDTVGGKGHSSKTSKQVSNERNHQTPVIPDDFRCPVSLELMKDPVIVSTGQTYDRSSIEKWLEAGHGTCPKTQQSLTSTVLTPNYVLRSLIEQWCEANGMEPPRRPSNSEPSKSVSAYAPAERSKIETLLQRLTCGSPEERRTAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQENAVTALLNLSIYENNKGSIVSSGAIPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAIRAGAIPTLMKLVTEPNGSMVDEALAILAILSSHPDGKAAIGAAEAVPFLVQFIANGSPRNKENAAAVLVHLSSGDQQYLAQARELGVMDPLLDLAQNGTDRGKRKAAQLLERMSRFLEQQSQNELNHVAHTSIDNT 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00269 563 PANTHER U BOX DOMAIN-CONTAINING 1 553 - -
Adu03g00269 563 Pfam U-box domain 169 239 IPR003613 GO:0004842|GO:0016567
Adu03g00269 563 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 553 - -
Adu03g00269 563 MobiDBLite consensus disorder prediction 239 261 - -
Adu03g00269 563 MobiDBLite consensus disorder prediction 149 166 - -
Adu03g00269 563 Pfam Armadillo/beta-catenin-like repeat 379 417 IPR000225 GO:0005515
Adu03g00269 563 Pfam Armadillo/beta-catenin-like repeat 296 335 IPR000225 GO:0005515
Adu03g00269 563 SUPERFAMILY ARM repeat 267 546 IPR016024 -
Adu03g00269 563 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 242 IPR013083 -
Adu03g00269 563 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 389 431 IPR000225 GO:0005515
Adu03g00269 563 CDD RING-Ubox_PUB 173 215 IPR045210 -
Adu03g00269 563 SMART arm_5 378 418 IPR000225 GO:0005515
Adu03g00269 563 SMART arm_5 460 500 IPR000225 GO:0005515
Adu03g00269 563 SMART arm_5 419 459 IPR000225 GO:0005515
Adu03g00269 563 SMART arm_5 502 542 IPR000225 GO:0005515
Adu03g00269 563 SMART arm_5 296 336 IPR000225 GO:0005515
Adu03g00269 563 SMART arm_5 337 377 IPR000225 GO:0005515
Adu03g00269 563 SUPERFAMILY RING/U-box 157 244 - -
Adu03g00269 563 ProSiteProfiles U-box domain profile. 168 242 IPR003613 GO:0004842|GO:0016567
Adu03g00269 563 MobiDBLite consensus disorder prediction 149 170 - -
Adu03g00269 563 SMART Ubox_2 172 235 IPR003613 GO:0004842|GO:0016567
Adu03g00269 563 Pfam Neurochondrin 429 548 IPR008709 -
Adu03g00269 563 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 307 349 IPR000225 GO:0005515
Adu03g00269 563 Gene3D - 253 561 IPR011989 -
Adu03g00269 563 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 430 472 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00269 Adu-Chr3 2487477 2490582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00269 1 554 U-box Gene Family AT3G46510 70.197 0.0 789
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00269 - - gmx:100812160 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g00269 03 2487477 2490582 Adu03g00269 03 2487477 2490582 ECH