Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00243 ATGGTTAATTGCTTGATGTTACTAACAAAAGTTGGTGAGACCAAAACCAATAACCATCCATTGAAGGGTGGTGGCTTTAAGTGCAAGACATGTCATAGGAGGTTCCTATCTTTTCAAGCACTTGGAGGACACAGAGCGAGTCATAAGAAGCTTAAGCTCATGATGGGTGCAGATCTTTCGTGTCAATTACCGTCAAGTTCTTCGTTATCATCGTGGAACATGATGACGAAGAACAAGATGCACTCGTGTTCTATTTGTGGGCTGGAGTTTGCGGTTGGACAAGCCCTTGGAGGACATATGAGAAAGCATAGAAATGGTGGAATGGTAATTCATGATCATGGTGCCATGACCAAATCTACTAGTGATGGTAGTGTTAAAACTAGAAGGTTTAATTTGTGCTTAGACTTGAACCTCACGCCCTCTGAGAATGATCTCAAGCTTAATTAA 447 0.4161 MVNCLMLLTKVGETKTNNHPLKGGGFKCKTCHRRFLSFQALGGHRASHKKLKLMMGADLSCQLPSSSSLSSWNMMTKNKMHSCSICGLEFAVGQALGGHMRKHRNGGMVIHDHGAMTKSTSDGSVKTRRFNLCLDLNLTPSENDLKLN 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00243 148 PANTHER ZINC FINGER PROTEIN ZAT12 1 145 - -
Adu03g00243 148 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Adu03g00243 148 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Adu03g00243 148 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 103 IPR013087 -
Adu03g00243 148 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 53 IPR013087 -
Adu03g00243 148 Pfam C2H2-type zinc finger 81 104 - -
Adu03g00243 148 Pfam C2H2-type zinc finger 26 50 - -
Adu03g00243 148 SMART c2h2final6 81 103 IPR013087 -
Adu03g00243 148 SMART c2h2final6 26 48 IPR013087 -
Adu03g00243 148 Gene3D Classic Zinc Finger 23 103 - -
Adu03g00243 148 SUPERFAMILY beta-beta-alpha zinc fingers 26 103 IPR036236 -
Adu03g00243 148 PANTHER ZINC FINGER PROTEIN ZAT5 1 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00243 Adu-Chr3 2311956 2312583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00243 1 148 C2H2 Transcription Factor Family AT2G28710 46.104 4.11e-29 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu03g00243 zf-C2H2_6 5.8e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00243 - - adu:107476874 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01261 08 21607768 21608605 Adu03g00243 03 2311956 2312583 PCT