Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Adu03g00190 | ATGGACTCCGACGACGACCTCCACCGCCTGTTATTGGAGCAACGCCGTGAGCTCGCCACGGCTGAGGCCATCGACTCCGATCTCGAATTCGCATACCGACTACAGCTTGAAGAAGCTCTCGCCGCCTCCCTCGCTTCCCTCCCCTCCTCTTCCTCCCCGCAACCACCACCACCACCACCACCACCAACCAACGATGACAAAAACGACGCTGTTTTGAACGCCACAACGCTCCAGGCGCAAGAACTCGCGAGGGTTGAGCAAGAACTTCGCGACCGCCACCTCAGCGAGGCTGAGGCCCGCAAAACGAGTCTCGATCTCAACCGTCGCGTCCACGATCAGAAAGTCGCCATCGAAATTCTTAGAATGCCCGAAGATGATTGGGTCGAATGGGGCGATAACTTCGAGAAACCCTTCTTCTTCGGGGAGGGTTCTTCTTCTTCGTCGTCGACGAAGAAGAAGAATACTGGGAAGGGCAATTTGGAAATGGACGAAGGCGATGATGGTGCGGTTTTTAGGGTTTACTTTAAGGGTTTGGTGAGCAAAGACGAGAAGTTGAAAAACGGAGAGAAGGTTCTGTTGGCTGGGATTGGGGTTGCGATTTGTGATCCTGAAGATAACTTGATTCTTGAGGTGCAAAAGCCACTCATTGGGTGTGGAACGAGCAAGATTGCTGCTGATCTTAAGGCTTTGATCGAAGGCTTGAATGCTGCGTTCGCTTTGGACTTGAAGCGTGTTCAGTTCTTCTGCGATTACTATCCAATCTTCCAATTCGTTAGGGGAAGATGGCCTGTGAAACAGCGGAAGGTTGCTTTGCTAGTCAATCAGGTGAATGCGCTACGGAGAAAATTTACTTACTGTGCTCCAATGCTTCTCGCAAGACATGATGTCAAGTATGCATTTAAGCTTGCAAGAGAGGCAATCGTTTCTCAATTGACAGCGCCTGCGGACTCTAACGGTATGAAGAATCTAAATGAAACTTGTGTCATATGTTTGGAGGATACCGATGGCAATAACTTTTTTTCGGTTGATGGCTGTCAACACCGGTATTGCTTTTCTTGCATGAGACAACATGTGGAGGTGAAGTTGCTTCATGGGATGGTGCCAAAATGCCCTCATGAAGGATGCAATTCCGAGCTTCAAGTTGACAGCTGCAAGAAATTCTTGACAAATAAATTAATTGAGACCATGCAACTGCGAAAGTTGGAAGCTTCAATTCCAGTTACTGAGAAAGTTTATTGTCCCTATCCACGATGCTCTGCTTTGATGTCAAAAACTGAGCTTTTTGAGTACTCCAAAAATCTTATTGGTGATTTTGAACAATCAGGACCTAAGAAATGTATAAAATGCCATGGTCTCTTCTGTTTTACTTGCAAGGTCCCTTGGCATAGTGGCATGAAATGCGAAGGCTGCTATCACATGACTTGCAGGTGTGGCTATGAATTCTGCTACAACTGTGGAGCCGAGTGGAAGAACAAGAAAGCAACGTGTTCTTGCCCACTTTGGGCTGAGGACAATATTTGGTTTGAGGATCATGCGAGGGACTCGGACGAAGAAGAAGAAGAGGAGGAGGAAGATGACGAATTTTTTGACTCAGATTATTCAGATGATGAATATTACTAA | 1620 | 0.4716 | MDSDDDLHRLLLEQRRELATAEAIDSDLEFAYRLQLEEALAASLASLPSSSSPQPPPPPPPPTNDDKNDAVLNATTLQAQELARVEQELRDRHLSEAEARKTSLDLNRRVHDQKVAIEILRMPEDDWVEWGDNFEKPFFFGEGSSSSSSTKKKNTGKGNLEMDEGDDGAVFRVYFKGLVSKDEKLKNGEKVLLAGIGVAICDPEDNLILEVQKPLIGCGTSKIAADLKALIEGLNAAFALDLKRVQFFCDYYPIFQFVRGRWPVKQRKVALLVNQVNALRRKFTYCAPMLLARHDVKYAFKLAREAIVSQLTAPADSNGMKNLNETCVICLEDTDGNNFFSVDGCQHRYCFSCMRQHVEVKLLHGMVPKCPHEGCNSELQVDSCKKFLTNKLIETMQLRKLEASIPVTEKVYCPYPRCSALMSKTELFEYSKNLIGDFEQSGPKKCIKCHGLFCFTCKVPWHSGMKCEGCYHMTCRCGYEFCYNCGAEWKNKKATCSCPLWAEDNIWFEDHARDSDEEEEEEEEDDEFFDSDYSDDEYY | 539 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Adu03g00190 | 539 | ProSiteProfiles | Zinc finger RING-type profile. | 327 | 371 | IPR001841 | - | |
| Adu03g00190 | 539 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 62 | 467 | IPR031127 | GO:0004842|GO:0016567 | |
| Adu03g00190 | 539 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 468 | 509 | IPR031127 | GO:0004842|GO:0016567 | |
| Adu03g00190 | 539 | SUPERFAMILY | RING/U-box | 325 | 406 | - | - | |
| Adu03g00190 | 539 | MobiDBLite | consensus disorder prediction | 512 | 539 | - | - | |
| Adu03g00190 | 539 | MobiDBLite | consensus disorder prediction | 50 | 65 | - | - | |
| Adu03g00190 | 539 | MobiDBLite | consensus disorder prediction | 141 | 155 | - | - | |
| Adu03g00190 | 539 | Pfam | Reverse transcriptase-like | 193 | 306 | IPR002156 | GO:0003676|GO:0004523 | |
| Adu03g00190 | 539 | ProSitePatterns | Zinc finger RING-type signature. | 345 | 354 | IPR017907 | - | |
| Adu03g00190 | 539 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 322 | 407 | IPR013083 | - | |
| Adu03g00190 | 539 | MobiDBLite | consensus disorder prediction | 513 | 539 | - | - | |
| Adu03g00190 | 539 | MobiDBLite | consensus disorder prediction | 141 | 161 | - | - | |
| Adu03g00190 | 539 | Gene3D | - | 171 | 313 | IPR036397 | GO:0003676 | |
| Adu03g00190 | 539 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 62 | 467 | - | - | |
| Adu03g00190 | 539 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 468 | 509 | - | - | |
| Adu03g00190 | 539 | Pfam | IBR domain, a half RING-finger domain | 409 | 467 | IPR002867 | - | |
| Adu03g00190 | 539 | SUPERFAMILY | RING/U-box | 466 | 505 | - | - | |
| Adu03g00190 | 539 | Gene3D | - | 464 | 535 | - | - | |
| Adu03g00190 | 539 | MobiDBLite | consensus disorder prediction | 44 | 69 | - | - | |
| Adu03g00190 | 539 | SMART | ibrneu5 | 394 | 467 | IPR002867 | - | |
| Adu03g00190 | 539 | ProSiteProfiles | TRIAD supradomain profile. | 323 | 539 | IPR044066 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Adu03g00190 | 170 | 487 | C3H Transcription Factor Family | AT2G19610 | 33.791 | 6.23e-53 | 183 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Adu03g00190 | - | - | ahf:112736554 | 932.169 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Adu03g00190 | 03 | 1774674 | 1777782 | Adu03g00190 | 03 | 1774674 | 1777782 | ECH |