Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00178 ATGATGTCTGAAGAACCCTTTTCTTCTGTTCTTCCTCCCAACACCACCATCACAAGCACCTTGGTTCATCTCCAAGACCCAACCTCAAACCCTAGTAGCAATAACTCAAAACCTAATTCAAATCAACCCACCAAGAAGAGGAGAAATCTTCCTGGAACACCAGATCCGGATGCAGAAGTGATAGCTATGTCACCAAAGTCGTTGATGGCGACGAACCGTTTCGTATGCGAAATCTGCAACAAGGGTTTCCAGAGGGACCAGAACTTGCAGCTGCATAGGAGAGGACACAACCTTCCATGGAAGCTAAAGCAGAGAAACAAGGAAGAACAAGTGAGGAAGAAGGTGTACGTGTGCCCGGAGAAGTCTTGCGTGCACCATGACCCCTGTAGAGCACTGGGGGACCTCACAGGTATCAAGAAACACTACAGCAGGAAGCATGGCGAGAAGAAATGGAAGTGTGACAAGTGTTCCAAGAAATACGCTGTTCATTCTGATTGGAAGGCCCATGCCAAGATCTGCGGGACTCGGGAGTACAAGTGCGACTGCGGCACCATTTTCTCCCGGAAGGACAGCTTCATAACACACAGAGCATTTTGTGATGCATTGGCTGAAGAAGGTGCAAGAATAAACTCAGTTCCAACAACTTTGAGCAACTTGATGGGTAGAAGAGATCATCATCATCACCATCATCAATTAGCAACAAGTAGAATCATCCCTCGTCATCACATTCTTCCAAGTGCTGGATTTCACTCGGAATTTGGTGGTGGTGGTGGTAGTGGTGGTGGTTATTATTCAGATCAGAAGCTGATGATGATGAGGAACAATAATATTCAGATTCCACTATGGTTAGACCAGGGCAATAGCAATAACAATCATAATCATGTTAGTGGCATTTCATCAAACACTAGTAGTGCATGCACCAATGGCAACACTATCATTATGCCTCATCATGATGTAGTGAACAACTCTATGTTTGGATCACAACAATGGCAGCAGAATCTAGAAGCATCATCATCATCACTCACAAACAATAACAACAATGCCAACGTGGCTATGATGATGCCACCACCACATGCAGGATTAAAGCAAGAACAAGATGAGATGTTCTATTTTGGTGCTAGTAATTACCATCATCATCACATAATGTTACAAAAAGCATCACAAATTGGAGGAGGTGATGAGTTGGTGAATTTGGAAGGTAGCATCAGTAGTATTCCTCCATTAATATTGAATCCAACAAGGAGGCCATCAAAGAATGATAATAAAGATGAAGATGATGAACTGGGTTTAACAAGGGATTTTCTTGGAGTTGGAGAAGATGAATCAACAATGAGCAACACTAGGCCATTGATGTTACAGCAACACCTAGCTGACTTCACAGCCATGGATATGCATCATCAAACCCACTACAGTAGTAGTAGTGGACATTACTGTTAG 1437 0.4335 MMSEEPFSSVLPPNTTITSTLVHLQDPTSNPSSNNSKPNSNQPTKKRRNLPGTPDPDAEVIAMSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNKEEQVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVHSDWKAHAKICGTREYKCDCGTIFSRKDSFITHRAFCDALAEEGARINSVPTTLSNLMGRRDHHHHHHQLATSRIIPRHHILPSAGFHSEFGGGGGSGGGYYSDQKLMMMRNNNIQIPLWLDQGNSNNNHNHVSGISSNTSSACTNGNTIIMPHHDVVNNSMFGSQQWQQNLEASSSSLTNNNNNANVAMMMPPPHAGLKQEQDEMFYFGASNYHHHHIMLQKASQIGGGDELVNLEGSISSIPPLILNPTRRPSKNDNKDEDDELGLTRDFLGVGEDESTMSNTRPLMLQQHLADFTAMDMHHQTHYSSSSGHYC 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00178 478 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 27 448 - -
Adu03g00178 478 SUPERFAMILY beta-beta-alpha zinc fingers 73 171 IPR036236 -
Adu03g00178 478 MobiDBLite consensus disorder prediction 409 428 - -
Adu03g00178 478 SMART c2h2final6 74 96 IPR013087 -
Adu03g00178 478 SMART c2h2final6 151 171 IPR013087 -
Adu03g00178 478 SMART c2h2final6 116 146 IPR013087 -
Adu03g00178 478 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Adu03g00178 478 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Adu03g00178 478 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 448 - -
Adu03g00178 478 Gene3D Classic Zinc Finger 130 206 - -
Adu03g00178 478 MobiDBLite consensus disorder prediction 1 59 - -
Adu03g00178 478 MobiDBLite consensus disorder prediction 8 48 - -
Adu03g00178 478 Gene3D Classic Zinc Finger 53 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00178 Adu-Chr3 1608449 1610412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00178 44 235 IDZ Gene Family AT3G45260 75.124 1.96e-110 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu03g00178 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00178 K25870 - ahf:112736536 453.751