Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00166 ATGAGTTCTCAGGAAAAGTCTCTGACTTTGGGTGGACATGAACAACAACATGCTGGTGCTGATGCTGATGCAGCAGCTTCTTGCAGAAGAACAGTTTCTCTGCCAGCTCAAAAGGTTGATGATCCAATGGGGATAACCGAAGAAACCATGCATGTTCCTCCAAGGAAGCGACAGAATCTTCTCCTAGAAATTCCCTCAAGAACTCCAGAAGAATGCTCCCAAGATTATGTGGCAATCAAAATGCCAATGACACCAAGTCCCACTCCCACCCCAAAGAGAGTGAACTTTCTCATATCTTCTCGCTCGGTCGATGCTCCTATGCATACTTCTCCAGGGCCTTCAGCTTCAAAAGGAAGATCATCCATAAGAAGCATTCTACCGAAATTGAGCTTCAGGTATCGGCCACCAACGGATACTGAAAAGGGTACTACTTCAGCACAAGAAGGTTCCTCTTCAGGTCATCGCGAAAAGCCATCAATCTCAAGATCACTATCCCTTAGTAAGATATTTACTCCTAGGATTAAAAGAACATCATCATTACCACTAGGAGAAATGGGACATTCAAATCCAGAATCTGCTCATGGTGGAAGTGTTGGTGGTCCTCTAAATAAAGGAGAGCCGCAGCGTAAGATAGCTCGCTCGCTTTCAGTGCCTGTCAATAACAAAGATAAAGGCATAAGGAGGATGGATTCATTTTACCGTATTGTTCCTACCACCCCTCGAGTAAAGGAAGGAAATGCATTGTCATCCACATCCCCAACAAAGAATTCCGAAATTAATGACGCGGATGATGATGACGGAGAAGATATACCTGAAGAAGAGGCTGTGTGTAGGATTTGTCTGGTTGATTTATGTGAAGGAGGTGAAACCTTCAAGTTGGAATGTAGCTGCAAAGGAGAACTTGCTCTGGCTCACCAAGAATGTGCAATTAAATGGTTTAGTATCAAGGGCAACAGAACCTGTGATGTATGCAAGGAGGATGTTCAGAACCTACCTGTCACTTTATTACGGATCCAAAGTGTTCGAGGCCGGAATCCAGGAATAAGTAGGACACAGCTCGAAGATGTAAACGGATACAGGCATACTCTTAATTTATCTGTTTTTTTTAATAGGGTATGGCAGGAAGTTCCGGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGTTATTGGTCACGAAAATGGGAACCAGTGCAATCGCCATATCTCTTCCATTTTCCTGTGTGCTAGGCCTACTTTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTCCAGTTTGCACTTGTGGTTCTTTTTGCGCATATATTTTACTCCGTGGTTCATGTGCAACCAGTTCTGTCAATCCTTCTGGCAACATTCGCCGGTTTCGGTGTGGTTATGAGTGGAAGTTCTATTCTTGTTGAGTTCTTCAGATGGAGAAGAAGATGGCAACAACAACAACAAGGTCCACAACTGATGACACAACCTCGGCCTGCAAATACGCCGCGTCCGGTGGTGCCTCCGAACCAGAATCAAACTGTGGAACAAGATCAAGAGAACTCAACTCAAAGCTGA 1593 0.4438 MSSQEKSLTLGGHEQQHAGADADAAASCRRTVSLPAQKVDDPMGITEETMHVPPRKRQNLLLEIPSRTPEECSQDYVAIKMPMTPSPTPTPKRVNFLISSRSVDAPMHTSPGPSASKGRSSIRSILPKLSFRYRPPTDTEKGTTSAQEGSSSGHREKPSISRSLSLSKIFTPRIKRTSSLPLGEMGHSNPESAHGGSVGGPLNKGEPQRKIARSLSVPVNNKDKGIRRMDSFYRIVPTTPRVKEGNALSSTSPTKNSEINDADDDDGEDIPEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNRTCDVCKEDVQNLPVTLLRIQSVRGRNPGISRTQLEDVNGYRHTLNLSVFFNRVWQEVPVLVIVSMLAYFCFLEQLLVTKMGTSAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSVVHVQPVLSILLATFAGFGVVMSGSSILVEFFRWRRRWQQQQQGPQLMTQPRPANTPRPVVPPNQNQTVEQDQENSTQS 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00166 530 MobiDBLite consensus disorder prediction 1 67 - -
Adu03g00166 530 SMART ringv_2 276 325 IPR011016 GO:0008270
Adu03g00166 530 SUPERFAMILY RING/U-box 273 328 - -
Adu03g00166 530 MobiDBLite consensus disorder prediction 494 530 - -
Adu03g00166 530 CDD RING_CH-C4HC3_MARCH 277 325 - -
Adu03g00166 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 332 IPR013083 -
Adu03g00166 530 PANTHER OS02G0165000 PROTEIN 47 503 - -
Adu03g00166 530 MobiDBLite consensus disorder prediction 137 174 - -
Adu03g00166 530 MobiDBLite consensus disorder prediction 512 530 - -
Adu03g00166 530 MobiDBLite consensus disorder prediction 243 257 - -
Adu03g00166 530 MobiDBLite consensus disorder prediction 90 123 - -
Adu03g00166 530 Pfam RING-variant domain 277 324 IPR011016 GO:0008270
Adu03g00166 530 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 47 503 - -
Adu03g00166 530 MobiDBLite consensus disorder prediction 80 216 - -
Adu03g00166 530 ProSiteProfiles Zinc finger RING-CH-type profile. 269 331 IPR011016 GO:0008270
Adu03g00166 530 MobiDBLite consensus disorder prediction 243 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00166 Adu-Chr3 1524455 1527839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00166 263 331 C3H Transcription Factor Family AT2G37950 45.714 9.50e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00166 - - gmx:100788108 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01335 08 22586813 22589664 Adu03g00166 03 1524455 1527839 PCT