Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Adu03g00145 | ATGAAGGATTGTTGGTTTTTGGACAACAATTTGAATGGGGTATCGGATGAAGTTTTTGATGTGGTGGGGTTTTTTGATTTCCCAATAGAAGATGTGGAAGATGATGCTGTGGAGGAGGATTGGGGTGCTCAGTTTAAACAACTTGAAGAGCCATCTCTTGGTGTGTTTTCGGTATCACCATCCGGGCTGAGTGATAAAACTAAGAATGAGAATCCGAAACTTGGGAGGAGTATCTCTACTCCTGTGGCCGATCCTGCTCGGCCTACATACGGCAATACTATTCGGAACCAGAATGTTTCTTTTAATGGGAAAAGGGTGCCCAAGTTCCAAACCTACAGCCCTGTGTCTGTCTTTGAAAGCAGTAGTTCCTCCTCGGTCGAGAACTCCAACTTTGATCTACCTGTCATCCCGGTAAAGCGTCCTCGAGGCAAACGCCGGCCTCTCTCAAGCTTCAGCTTGCTATTATCTGTTCCATTCGTCTCTAACTCCCCAAAAGATCATACTGAGAAGAAGGGATCTGCATTGCAAGGGTCAGTTACCCACCGAAAATGCATGCATTGTGAGGTGACATCGACGCCGCAGTGGAGAGAAGGACCCATGGGTCCAAAGACACTTTGCAATGCTTGTGGGGTTCGGTATAGGTCCGGCCGGCTCTTCCCTGAATACCGGCCTGCAGCTAGCCCTACGTTTGTACCATCATTGCACTCGAACTCTCACCGGAAGGTCATCGAAATGAGAAGCCGAACTGCGACAGAGACTCTTAAGGGTTCTTCTATGTTGTAA | 783 | 0.4802 | MKDCWFLDNNLNGVSDEVFDVVGFFDFPIEDVEDDAVEEDWGAQFKQLEEPSLGVFSVSPSGLSDKTKNENPKLGRSISTPVADPARPTYGNTIRNQNVSFNGKRVPKFQTYSPVSVFESSSSSSVENSNFDLPVIPVKRPRGKRRPLSSFSLLLSVPFVSNSPKDHTEKKGSALQGSVTHRKCMHCEVTSTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVPSLHSNSHRKVIEMRSRTATETLKGSSML | 260 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Adu03g00145 | 260 | PANTHER | GATA TRANSCRIPTION FACTOR | 24 | 248 | - | - | |
Adu03g00145 | 260 | SMART | GATA_3 | 178 | 228 | IPR000679 | GO:0006355|GO:0043565 | |
Adu03g00145 | 260 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 181 | 241 | - | - | |
Adu03g00145 | 260 | Pfam | GATA zinc finger | 184 | 217 | IPR000679 | GO:0006355|GO:0043565 | |
Adu03g00145 | 260 | PANTHER | GATA TRANSCRIPTION FACTOR 13-RELATED | 24 | 248 | - | - | |
Adu03g00145 | 260 | ProSiteProfiles | GATA-type zinc finger domain profile. | 178 | 214 | IPR000679 | GO:0006355|GO:0043565 | |
Adu03g00145 | 260 | MobiDBLite | consensus disorder prediction | 59 | 76 | - | - | |
Adu03g00145 | 260 | Gene3D | - | 177 | 228 | IPR013088 | GO:0006355|GO:0008270 | |
Adu03g00145 | 260 | CDD | ZnF_GATA | 183 | 230 | IPR000679 | GO:0006355|GO:0043565 | |
Adu03g00145 | 260 | ProSitePatterns | GATA-type zinc finger domain. | 184 | 209 | IPR000679 | GO:0006355|GO:0043565 | |
Adu03g00145 | 260 | MobiDBLite | consensus disorder prediction | 59 | 97 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Adu03g00145 | Adu-Chr3 | 1380113 | 1383706 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Adu03g00145 | 8 | 248 | C2C2-Gata Transcription Factor Family | AT1G08000 | 39.785 | 6.00e-50 | 164 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-GATA | Adu03g00145 | GATA | 5.8e-16 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Adu03g00145 | - | - | aprc:113853859 | 281.567 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Adu08g01350 | 08 | 22804367 | 22808469 | Adu03g00145 | 03 | 1380113 | 1383706 | PCT |