Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00109 ATGTTGGCAGGGTCAATAGCTTGGTTCTCCTTTCTGAATGTAACCAATTACTCACCTATTACAAATTCTTTGGAGATAGAATCTCTATCGGTTACATTCCATGGACATGACCTAATAGTTGATTCTGAATTGGAGTTAAACTATGGAAGACGCTATGGTCTACTTGGATTAAATGGATGTGGAAAATCTACTTTGCTTACGGCAATAGGTTGCCGTGAACTGCCGATTCCTGAGCACATGGATATCTATCACCTTAGCAGGGAAATTGAAGCCACAGATATGTCTGCATTGGAGGCAGTCATAAACTGCGACGAGGAAAGATTGAAGTTGGAAAAAGAAGCGGAAGCTTTGGCTGCCCAGGATGATGGTGGTGGTGAAACTCTTGAACGGATTTATGAACGATTAGAAGCCCTAGATGCAGCAACTGCAGAAAAGCGTGCTGCTGAAATTTTACATGGTCTCGGTTTCAACAAGGAGATGCAAGCAAAGAAGACACGTGATTTTTCTGGTGGCTGGAGAATGAGAATTGCACTAGCTCGAGCTCTATTTATGAACCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTATGGCTTGAGGAGAGCTTGAAGAAGTTTGACCGTATACTGGTTGTGATTTCACACTCTCAGGACTTCCTTAATGGTGTCTGCACAAATATTATCCACATGCAAAACAAAAAACTAAAGCTTTACACCGGTAACTATGACCAGTACGTTCAGACTCGTTCTGAGTTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAAGAGCAGATTGCCTCAATGAAGGAATATATTGCTCGATTCGGCCACGGTTCGGCAAAACTAGCTCGCCAAGCACAAAGTAAAGAGAAAACACTGGCTAAAATGGAACGGGGTGGACTTACCGAGAGAGTGGTTAAAGACAAAGTCTTGGTGTTCCATTTTACTGATGTGGGAAAACTTCCCCCTCCTGTTCTTCAGTTTGTTGAGGTGACGTTTGGTTATACCCCTGATAATCTCATTTACAAGAATATCGACTTTGGTGTTGATTGTGACTCTAGGGTAGCCCTGGTTGGACCCAACGGTGCCGGAAAGAGTACACTACTGAAACTCATGACGGGTGACTTAATTCCCAATGATGGCATGGTCCGGCGTCACAACCATCTTCGAATTGCTCAATTTCACCAGCACTTGGCTGATAAGCTGGACATGGAGATGTCTGCACTCCAGTTTATGATGAAAGAGTACCCTGGAAATGAGGAAGAGAAGATGAGAGCAGCTATTGGGAAGTTTGGGCTGTCAGGTAAAGCTCAGATAATGCCTATGAAGAACTTGTCTGATGGGCAGAGGAGCCGTGTGATATTTGCATGGCTAGCCTGGAAGCAGCCTCATTTGCTACTCCTGGATGAGCCAACTAATCATTTGGATATCGAGACAATTGACTCATTGGCCGAGGCATTGAACGAATGGGATGGCGGCATGGTGCTCGTTAGCCATGACTTCAGGCTCATAAACCAGGTGGCCCATGAGATATGGGTGTGTGCAAATCAAACTATCACCAGATGGGATGGTGATATCATGGACTTCAAGATGCATCTCAAATCACAGGCAGGCTTATCTGACTGA 1653 0.4446 MLAGSIAWFSFLNVTNYSPITNSLEIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPEHMDIYHLSREIEATDMSALEAVINCDEERLKLEKEAEALAAQDDGGGETLERIYERLEALDAATAEKRAAEILHGLGFNKEMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEESLKKFDRILVVISHSQDFLNGVCTNIIHMQNKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTERVVKDKVLVFHFTDVGKLPPPVLQFVEVTFGYTPDNLIYKNIDFGVDCDSRVALVGPNGAGKSTLLKLMTGDLIPNDGMVRRHNHLRIAQFHQHLADKLDMEMSALQFMMKEYPGNEEEKMRAAIGKFGLSGKAQIMPMKNLSDGQRSRVIFAWLAWKQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCANQTITRWDGDIMDFKMHLKSQAGLSD 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00109 550 Coils Coil 242 262 - -
Adu03g00109 550 Pfam ABC transporter 235 308 IPR032781 -
Adu03g00109 550 Pfam ABC transporter 351 482 IPR003439 GO:0005524
Adu03g00109 550 Pfam ABC transporter 42 196 IPR003439 GO:0005524
Adu03g00109 550 Gene3D - 22 288 IPR027417 -
Adu03g00109 550 ProSitePatterns ABC transporters family signature. 168 182 IPR017871 GO:0005524
Adu03g00109 550 CDD ABCF_EF-3 24 241 - -
Adu03g00109 550 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 24 264 IPR003439 GO:0005524
Adu03g00109 550 Coils Coil 100 120 - -
Adu03g00109 550 PANTHER - 18 550 - -
Adu03g00109 550 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 18 550 - -
Adu03g00109 550 CDD ABCF_EF-3 335 527 - -
Adu03g00109 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 271 IPR027417 -
Adu03g00109 550 Gene3D - 299 548 IPR027417 -
Adu03g00109 550 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 335 550 IPR003439 GO:0005524
Adu03g00109 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 531 IPR027417 -
Adu03g00109 550 SMART AAA_5 48 250 IPR003593 -
Adu03g00109 550 SMART AAA_5 360 546 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00109 Adu-Chr3 1006996 1011258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00109 155 222 Calmodulin-binding Proteins AT2G36910 41.429 4.15e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00109 K06185 - gmx:100809491 979.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01374 08 23296634 23300545 Adu03g00109 03 1006996 1011258 PCT