Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00104 ATGGGAAGAGCTCCATGTTGTGACAAGGCAAATGTGAAGAGAGGACCATGGTCACCTGAAGAAGACTTAAAGCTCAAAGAATACATACACAAGCATGGCACTGGTGGCAATTGGATTGCTCTTCCTCAAAAAGCTGGTCTCAAGAGATGTGGGAAGAGTTGCAGACTGAGATGGCTTAACTATCTGAGGCCAAACATTAAGCATGGAGAATTTTCTGAAGAAGAAGACAGAATCATTTGCAGCCTCTATGTTAACATTGGAAGCAGATGGTCAATTATAGCAGCTCAGTTGCCAGGAAGGACTGACAATGATATAAAGAATTATTGGAACACTAAGCTCAAAAAAAAACTCATCTCTGGTTTCATTCCCAATTCTTCTTCTATTCATCAAAGAAAACATCATCAACAACAACAACAACAACCTCCATTTCCATCATCATCAATGTACATGGATCAATGTTATGGATCTTATGTCACAGGCCTTGTTGATCCTATTTCACTTCCTTCAACTGAATACTATGCAAACACAACAACAACCTCAGTTCCATTTTACCAGCACCAAGTAGATTCCATTGTTAGCCCCAGCAGCATGCAACAAAATTATCACATGTTTGGAAGTGAAGGTAGTTGCAGTTCCTCTGATAATGGAAGCAGTATCAAGCAAGAGGAAATTGGGTATCATCATCAAGGATCATACAACAACATTATTGCATTTGATGAGTTCAACAACAACAATGATCATCATCATCATAATAATAAGTTTCTTCTTATGCCTAGTAGTTTCAATGATAATAATAGTAATAGCATTGTTAATTATGATGGTGGTGAAAATATTACTGAATATGATCTTGAGGAAATTAAGCAATTGATTAGTGTTAGTAGTAGTGTTGATGAAATCAAGGAGGAGAAACCTATTTACTATTATTATTGA 930 0.3667 MGRAPCCDKANVKRGPWSPEEDLKLKEYIHKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSEEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLISGFIPNSSSIHQRKHHQQQQQQPPFPSSSMYMDQCYGSYVTGLVDPISLPSTEYYANTTTTSVPFYQHQVDSIVSPSSMQQNYHMFGSEGSCSSSDNGSSIKQEEIGYHHQGSYNNIIAFDEFNNNNDHHHHNNKFLLMPSSFNDNNSNSIVNYDGGENITEYDLEEIKQLISVSSSVDEIKEEKPIYYYY 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00104 309 Gene3D - 7 68 - -
Adu03g00104 309 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Adu03g00104 309 SMART sant 67 115 IPR001005 -
Adu03g00104 309 SMART sant 13 64 IPR001005 -
Adu03g00104 309 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Adu03g00104 309 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Adu03g00104 309 CDD SANT 16 62 IPR001005 -
Adu03g00104 309 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Adu03g00104 309 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Adu03g00104 309 PANTHER TRANSCRIPTION FACTOR RAX3 1 296 - -
Adu03g00104 309 Gene3D - 69 142 - -
Adu03g00104 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Adu03g00104 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Adu03g00104 309 PANTHER OS09G0431300 PROTEIN 1 296 - -
Adu03g00104 309 CDD SANT 70 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00104 Adu-Chr3 954280 955723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00104 1 118 MYB Transcription Factor Family AT5G57620 90.678 1.45e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu03g00104 Myb_DNA-binding 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00104 K09422 - gmx:100779919 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01376 08 23391495 23392742 Adu03g00104 03 954280 955723 PCT