Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00093 ATGACCAAACCACCCTCCGCCTTCGACGCTCTCATGTCCGGTGCTCGCGCTGCCGCCGCCGCCGCTGCCAAGAAGAAGAAATCCGAGCAGTCGCAGCAACCAACTGTTTCTTCTCCCAAGAAACGAAAACCTTCACCCTCCACTCTCCCCACTCCAACCTCCACGCTAAACCCTAACGACCCCAAACCCTCCGAAACCGTTCCTACGCCAACGAGTGACCCGCCCAAGCAAGAACCGGAGAAAGAAGGCCCTCCTCCGACCAAGACTCGCCACGTGTCTTCTTCATCTGCCTTGCAGGAGCTGAAGAAGCGCATTCCGCAGCTGAAGGCGAAGCCTTCGAAATTCGATCCTAGCTCAGTGGCTTGTTGGGAGAAGGGCACGCCTGTGCCGTTCTCGTTGCTGGCTTTGGCGCTTGAAATGATTTCTGCGGAACCTGGCAGAATCAAGATGACAGATATTGTGTGCAATTTGATGAAGACTGTGATATACTCTACCCCTGAGGATCTTGTGCCTCTGATTTATCTCTTCGCGAAGAGGGTTGCTCCGGCGCATGAAGGGCTGGAATTGGGAATTGGCGAGACTTCGATTATTAAGGCACTTGCTGAGGCAACTGGAAGTACTGAATCCAAAATCAAGAAGCAGTATCAGGGCGAGGGTGATTTGGGAAGAGTTGCCAAGATATGCCGTTCATCTCAGTCCATGATGCGGAAGCCTGAGGCTCTGACTATTAGGAAAGTTTTCAACACCTTCCGTCTTATTGCCAAGGAATCTGGAAGAGACAGTCAAAAGAAGAAAAAGAATCATATAAAGGCACTTCTTGTTGCTGCAACTGACTGCGAACCTCAATATCTTATCTGTCTTCTACAGGGAAAATTGCGGATTGGTGTGGCTGAGCAAACTCTCTTAGCTGCATTAGGCCAAGCAGCAGTACAGAGTGAAGAACATTCTAAACCACCTGATGGCATTAAGTCTCCTTTGGAAGAGGCTGTAAAAATTGTTAAACAAGTCTACTCTGTTCTTCCTGTCTACGACGAAATAGTATCTGCACTTCTTACGCATGGTGTATGGAAACTTCCATCAACATGTAATTTTACTCCTGGTATTCCAGTTGGACCTATGCTGTCAAAACCAACGAAGGGTATCTCTGATATTCTAAATTCATTGCAAGATGTGGAGTTTACTTGTGAATACAAGTATGATGGAGAGCGTGCCCAGATACATTACATGGAAAATGGTTCAGTTGAGATTTATAGTAGAAATGCTGAGCGGAATACTGGGAAGTTTCCTGATGTTGTTGCTGCAATTTCAAGGTTAAAGAAATCAACTGTATCATCATTTGTTCTTGATTGTGAAATTGTTGGATATGATCGTGAGAAACAGACCATCCGTTCCTTCCAGGATCTTACTACTCGGCCTCGTAAAAATGTATCTGTGGATAATATAAAGGTTGACGTCTGCATATTTGCTTTTGATATACTGTATCTTAATGGCCGAGTACTTCTTCAGGATAACCTGAAAATCCGTAGAGAGCATCTTTATGCCTCTTTTGAAGAAGAAACTGGAGTTTTTCAGTATGCAACGGCAATAACATCAAATGACATTGAGGAAATTCAGAAATTTCTCGACAAAGCTGTTGCGTCAAGCTGTGAGGGATTAATCATTAAAACTTTAAGTGAAGATTCTACATATGAACCTTCCAATCGGTCACACAATTGGCTAAAACTGAAGAAAGATTATCTGGATAACATAGGGGACTCACTAGATTTGGTACCTATAGGTGCATTCTACGGACGTGGGAAACGTACAGGAGTCTATGGTGCTTTTCTTCTTGCTTGCTATGACTACAATAACGAAGAATTTCAAAGTATTTGTAAGATTGGAACGGGATTTACTGAAGACGTGCTCGAACAGCGTTCTAAAAGTCTTGGTTCTCAAGTGATTCCTGGGCCAAAGCGATACTATCAATGTGGAGATAAAATGAAGCCTGATGTCTGGTTTGAAGCTAGTGAGGTGTGGGAGGTGAAAGCTGCAGATTTGACCATTAGCCCAGTTTACCGAGCTGCAGTGGGCATAGTAGATTCAGATAAGGCTTTAATGGTGTTCCTCTATGTATTTTTCCCCCCTAAAGGGCATATCTCTTAG 2142 0.4449 MTKPPSAFDALMSGARAAAAAAAKKKKSEQSQQPTVSSPKKRKPSPSTLPTPTSTLNPNDPKPSETVPTPTSDPPKQEPEKEGPPPTKTRHVSSSSALQELKKRIPQLKAKPSKFDPSSVACWEKGTPVPFSLLALALEMISAEPGRIKMTDIVCNLMKTVIYSTPEDLVPLIYLFAKRVAPAHEGLELGIGETSIIKALAEATGSTESKIKKQYQGEGDLGRVAKICRSSQSMMRKPEALTIRKVFNTFRLIAKESGRDSQKKKKNHIKALLVAATDCEPQYLICLLQGKLRIGVAEQTLLAALGQAAVQSEEHSKPPDGIKSPLEEAVKIVKQVYSVLPVYDEIVSALLTHGVWKLPSTCNFTPGIPVGPMLSKPTKGISDILNSLQDVEFTCEYKYDGERAQIHYMENGSVEIYSRNAERNTGKFPDVVAAISRLKKSTVSSFVLDCEIVGYDREKQTIRSFQDLTTRPRKNVSVDNIKVDVCIFAFDILYLNGRVLLQDNLKIRREHLYASFEEETGVFQYATAITSNDIEEIQKFLDKAVASSCEGLIIKTLSEDSTYEPSNRSHNWLKLKKDYLDNIGDSLDLVPIGAFYGRGKRTGVYGAFLLACYDYNNEEFQSICKIGTGFTEDVLEQRSKSLGSQVIPGPKRYYQCGDKMKPDVWFEASEVWEVKAADLTISPVYRAAVGIVDSDKALMVFLYVFFPPKGHIS 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00093 713 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 364 582 - -
Adu03g00093 713 MobiDBLite consensus disorder prediction 1 99 - -
Adu03g00093 713 ProSiteProfiles ATP-dependent DNA ligase family profile. 478 614 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Adu03g00093 713 ProSitePatterns ATP-dependent DNA ligase signature 2. 550 576 IPR016059 GO:0003909
Adu03g00093 713 CDD OBF_DNA_ligase_I 584 696 - -
Adu03g00093 713 Gene3D - 382 581 - -
Adu03g00093 713 SUPERFAMILY Nucleic acid-binding proteins 584 696 IPR012340 -
Adu03g00093 713 Pfam ATP dependent DNA ligase domain 372 576 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Adu03g00093 713 Gene3D - 585 703 IPR012340 -
Adu03g00093 713 Gene3D DNA ligase/mRNA capping enzyme 401 526 - -
Adu03g00093 713 CDD Adenylation_DNA_ligase_I_Euk 361 579 - -
Adu03g00093 713 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 112 362 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Adu03g00093 713 Pfam ATP dependent DNA ligase C terminal region 601 687 IPR012309 GO:0003910|GO:0006281|GO:0006310
Adu03g00093 713 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 396 404 IPR016059 GO:0003909
Adu03g00093 713 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 188 689 IPR000977 GO:0003910|GO:0005524|GO:0071897
Adu03g00093 713 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 25 698 - -
Adu03g00093 713 PANTHER DNA LIGASE 1 25 698 - -
Adu03g00093 713 Gene3D - 106 374 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Adu03g00093 713 MobiDBLite consensus disorder prediction 26 62 - -
Adu03g00093 713 Pfam DNA ligase N terminus 130 305 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00093 Adu-Chr3 867194 873880 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00093 5 698 Core DNA Replication Machinery Family AT1G08130 64.124 0.0 911
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00093 K10747 - aip:107642653 1219.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g00093 03 867194 873880 Adu03g00093 03 867194 873880 ECH