Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00082 ATGGATTACAAGGAAGACTATTTCTCCAACACTAACAGTGATAATTGTAATGTTGTTCATCATGATGCTACCCATCATATAGCCAAGGGAAAACGGACCAAAAGGCTGAGGCTTTTGTGTGGCGGCACAACCCTCATGACGGCGGCGTCTAGCTGTTCTAGCGCTTCCGGGGATCATGGCAGCGGCGATGATCACGGCTCGTTTTCGATTTCTTCCACAACGAATCAAGAGGAAGAAGATATGGCTAATTGCTTGATTCTTCTTGCTCAAGGAGGAGGAGATTCTCATCAAAAACCGCCACAAATTGATGATCAAGATGAAGATGATAACAAGAAGATTATTGAAATCAAGAGTAGGAAATTCTCGGAGATTGAAACCGCCACCATAAACAACAAGGTTGGTTTCTATATTTATGAGTGCAAGACTTGTAACCGAACCTTCCCTTCCTTTCAAGCCTTGGGTGGTCATAGAGCCAGTCACAAGAAGCCTAAGCTCACAACAATCCCTGCCGCCGAGGACAAGAAACCACCACCACCGTCTCCGCCACCTCCACTGCCACCCCCACCACCGCAGCAACTTATGATGAACACCAATTATGACCATAGCCAGCAGACTGAAACTGTCCCTCCAAATAATAATAATCCAATAATTTCTCTACAATTTGGGAGTGGGCAAAAAGGTAATTTCCACAACAACAACAAGCCCAACAAGATTCACGAGTGCTCCATATGTGGCTCCGAATTCACATCCGGCCAAGCACTGGGTGGACACATGAGAAGGCATAGGGCTACAGCGGCCGCAGCCGCCAATAATACTGCTCAGGCCAATGTTGGCCTAAGCAGAATTGAGGCAACTTCTACTGTTATAACAACAACAGTAGAAGTTCAGCCTCGAAATATTCTAGAATTGGATCTCAACCTTCCGGCTCCGGAGGAAGACCTCCGGGAGCCAAAGTTTCAGTTCGCTACCGCGGCAACTAAGAAATCTATGGTGCTCTCAGCTGCTCCGGCTTTGGTGGACTGCCATTATTAG 1032 0.469 MDYKEDYFSNTNSDNCNVVHHDATHHIAKGKRTKRLRLLCGGTTLMTAASSCSSASGDHGSGDDHGSFSISSTTNQEEEDMANCLILLAQGGGDSHQKPPQIDDQDEDDNKKIIEIKSRKFSEIETATINNKVGFYIYECKTCNRTFPSFQALGGHRASHKKPKLTTIPAAEDKKPPPPSPPPPLPPPPPQQLMMNTNYDHSQQTETVPPNNNNPIISLQFGSGQKGNFHNNNKPNKIHECSICGSEFTSGQALGGHMRRHRATAAAAANNTAQANVGLSRIEATSTVITTTVEVQPRNILELDLNLPAPEEDLREPKFQFATAATKKSMVLSAAPALVDCHY 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00082 343 MobiDBLite consensus disorder prediction 172 193 - -
Adu03g00082 343 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 20 343 - -
Adu03g00082 343 Gene3D Classic Zinc Finger 136 261 - -
Adu03g00082 343 MobiDBLite consensus disorder prediction 154 196 - -
Adu03g00082 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 165 IPR013087 -
Adu03g00082 343 MobiDBLite consensus disorder prediction 90 110 - -
Adu03g00082 343 ProSitePatterns Zinc finger C2H2 type domain signature. 241 261 IPR013087 -
Adu03g00082 343 SUPERFAMILY beta-beta-alpha zinc fingers 137 261 IPR036236 -
Adu03g00082 343 SMART c2h2final6 239 261 IPR013087 -
Adu03g00082 343 SMART c2h2final6 138 160 IPR013087 -
Adu03g00082 343 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Adu03g00082 343 PANTHER ZINC FINGER PROTEIN ZAT5 20 343 - -
Adu03g00082 343 Pfam C2H2-type zinc finger 138 163 - -
Adu03g00082 343 Pfam C2H2-type zinc finger 239 263 - -
Adu03g00082 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 266 IPR013087 -
Adu03g00082 343 MobiDBLite consensus disorder prediction 52 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00082 Adu-Chr3 728178 729209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00082 26 343 C2H2 Transcription Factor Family AT2G28200 41.104 2.45e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu03g00082 zf-C2H2_6 2.8e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00082 - - aip:107629278 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g01577 06 43525820 43526990 Adu03g00082 03 728178 729209 ECH
Adu08g01392 08 23565489 23566565 Adu03g00082 03 728178 729209 ECH
Adu03g00082 03 728178 729209 Adu03g00082 03 728178 729209 ECH
Adu08g01392 08 23565489 23566565 Adu03g00082 03 728178 729209 PCT