Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00080 ATGGCGGCTGCATCATCTGATGAAGGTGGTGGTGGATTCCCACCTATGACGCAATACTCATCATCATCATCATCATCATCATCATCATCATCCACCATGTACCATTATCTCTCAGTTCTCAATGATAAAATCAACGAGTTGCAGTCACTTGTGGGGGTTATAGCCTCCCCCAATCGGCACCACTCATCAATTCCTTGTTCTTCCTATTCCATGGCCATATCCACCATGACCTCCACCATCCAAGATATCATACTTGCTTCCTCTTCATTCAGACTCACCTTCCAACAACACATCAATAGTTATAACAATCCATCATCATCAGGTACCATTATTGCTCCTTCTTGCAATAATCAACAATTAGAATTGCACCCTCATCACCACCACCAATCTTATGATTATAATAATAGTAATATCATTAGAGGAGGTACTAGTAGTGTTGCTAATCATGAACCTGCACAAGAAGAAGACGAAGAAGATGAAGAAACACTCCATTGGTTTTCTGAACCCTACAACAATAACAATAGTACTGTTATTTATTGTGATGATGATAACAATAATACTAAGGATGAAGATGGAGAAGAAGAAACAGATATAATTGAGTTGGATGCTGCTGATTTGTTAGCAAGCTACACACATTTCTGCCAAATATGTGGGAAAGGATTTAAGCGCGAAGCGAATCTGAGGATGCATATGAGGGCTCATGGGGATGAATTCAAAACCAGTGAAGCCTTGAAGAACAACAAGAATAACAAGAAGATGATGATAACGAAGAAGAAGAAGTATTCGTGCCCTGAAGATGGGTGCAGGTGGAACAAGAATCATGCCAAGTTTCAGGCACTGAAATCAATGGTGTGTGTGAAGAATCACTACAAGAGAAGCCATTGCCCAAAGATGTATGTTTGCAAGAGGTGCAACAACAAGAACTTCTCTCTGCTCTCTGATTTGAGGACCCATGAGAAGCACTGTGGTGATCCCAATAAATGGTTGTGTTCTTGTGGAACCACTTTCTCAAGAAAAGACAAGCTCTTCGGACATCTTGCTTTGTTCCTTGGCCACTCCCCAGTTCATGCTGCTACTCAACGATCATAA 1089 0.4105 MAAASSDEGGGGFPPMTQYSSSSSSSSSSSSTMYHYLSVLNDKINELQSLVGVIASPNRHHSSIPCSSYSMAISTMTSTIQDIILASSSFRLTFQQHINSYNNPSSSGTIIAPSCNNQQLELHPHHHHQSYDYNNSNIIRGGTSSVANHEPAQEEDEEDEETLHWFSEPYNNNNSTVIYCDDDNNNTKDEDGEEETDIIELDAADLLASYTHFCQICGKGFKREANLRMHMRAHGDEFKTSEALKNNKNNKKMMITKKKKYSCPEDGCRWNKNHAKFQALKSMVCVKNHYKRSHCPKMYVCKRCNNKNFSLLSDLRTHEKHCGDPNKWLCSCGTTFSRKDKLFGHLALFLGHSPVHAATQRS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00080 362 PANTHER OS08G0562300 PROTEIN 21 359 - -
Adu03g00080 362 MobiDBLite consensus disorder prediction 143 162 - -
Adu03g00080 362 MobiDBLite consensus disorder prediction 15 29 - -
Adu03g00080 362 Gene3D Classic Zinc Finger 208 269 - -
Adu03g00080 362 Pfam C2H2-type zinc finger 212 234 - -
Adu03g00080 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 212 239 IPR013087 -
Adu03g00080 362 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 21 359 IPR044300 GO:0010044|GO:0010447
Adu03g00080 362 ProSitePatterns Zinc finger C2H2 type domain signature. 214 234 IPR013087 -
Adu03g00080 362 SUPERFAMILY beta-beta-alpha zinc fingers 211 268 IPR036236 -
Adu03g00080 362 MobiDBLite consensus disorder prediction 1 29 - -
Adu03g00080 362 SMART c2h2final6 261 294 IPR013087 -
Adu03g00080 362 SMART c2h2final6 299 321 IPR013087 -
Adu03g00080 362 SMART c2h2final6 212 234 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00080 Adu-Chr3 716399 717487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00080 15 360 C2H2 Transcription Factor Family AT5G22890 45.763 6.55e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu03g00080 zf-C2H2_6 4.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00080 - - gmx:100802399 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01394 08 23614962 23616961 Adu03g00080 03 716399 717487 PCT