Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00060 ATGGAGCCACCGGTCGTTAGATCGAGAGGGAGGCCGCGGAAGCGTAGAAGAAAAGAGGAAGAAATGGAAGCTCTGGAAGCAAAGAGGCAAGCCTTGGCAACCAGATCGATAGCGTTGGTTGGACGATTCGTGCTGAAGGAGTTCCCGAAAATCGGTGTTTTCCTCGGTAAAGTTGTGTACTACGAGTGTGGCTTGTATAGAGTTAGTTATGAGGACGGTGATTTCGAGGATTTGGATAGTGGTGAGGTTCGTGCTGTTCTACTAAATGACAGTGATTTTGATGATGATTTGACTAAGAGGAAGGGTAAATTGGAGCAATTAGTGTTGAAGAATAGTGTAAAGGTTCAAGCTAAGTCGGTGAAGGCTTCTGATGAGATGAATAAAGATGAATCCAAGGTTGATGGACCTGTTTCGGGAGAACTTAACGGTGAAAACGGTGAGGAACAAGCTGAAGGTGGCGATGATTTGTTGAGTGATGATTATTCTGATTCAGATGCTGAGGCAGTGCCTGCGGTGCCACCGCGGCCGCCTTTGTTGCAGTTGCCACCATCGTCAGGGACTATTGGTGTGCCGGAGCAGTGTGTTTCGCACCTGTTTGCTGTTTATGGTTTCTTGAGATCATTCAGCACTAGGTTGTTCCTGGCACCGTTTACTTTAGATGATTTTGTTGGTTGTCTTAATTGCCGAGTTGCTAACAGCTTGATTGATTCTATTCACGTCTCCCTATTGCGGGTATTGAGGCATCATCTTGAATCCGTTTCATCTGAAGGCTCAGAGCTTGCATCGAAATGCCTTAGTTGTTGTATTTGCAGGTGCAATGATTGGGGCTTGCTTGATGCATTGACTTGGCCTGTTTTTGTGATTCAATATTTATTAGTTAATGGACACACAAAAGGACCTGAATGGAAAGGGTTTTATGATGAGGCTTTTGCTTGCGAGTATTATTTATTGCCTGTAAGTAGGAAGTTAATGATATTGCAAAAACTATGCGATGATGTTTTGGATTCAGAGGAGCTAAAAGCTGAAATGAACATGCGGGAAGAATCAGAGGTTGGGGTGGATTATGACGCAGAAGATATCGTTGCTGCAGAAAATGGGCCTGGAAAAGTCCTACCAAGACATGCCAATACTGCTTGTGAGGATAAAGGAGCCATGAAGATAGTTTTGGCATCAAATTTTGTGAACCAACATGTTAACCCTAATAATTCCAATTCCAGAAATGCAGGAAACATTGGTGATGGTGATGATAGAAATGGAGATGAATGTCGTCTTTGTGGTATGGATGGGACCTTGATTTGTTGTGATGGGTGCCCCTCTGCTTATCACTCCAGGTGTATTGGTGTTATGAAAATGCATATACCAGAAGGACCGTGGTATTGTCCAGAATGCAAGATTAACATGATTGGGCCAACAGTTGCAAAGGGAACATCACTTAGAGGTGCTGAAATATTTGGAATGGATTTGTACGGGCAGCTTTTCATGAGTTCTTGCGACCACTTATTGGTGCTCAATGTCAACAATGATGAATTCTGTCTTAAATATTACAACCAGAGTGACATTCCTAATGTTATCCAAGTGCTTTGCGGATCCTTGCAGCATAGACCAATATACTATGATATTTGCATGGCAGTTATGCAATATTGGAATATTTCTGAAAGAGTCTTGCCTCTTCCTCCTCCGTCAAGTGAAGATGGTCATAAGCCTGTTAGTTTGGTGAATGGAGAGTACTCTCACACTTTGAGCTTGATTTATAGTGGCAATGTAGTCCCTTCATATGATACCTCAACAACTAACACTGTAAATCATGGTCCCGAAAGCAGCGGTAATGAGCTCCCTACCACAAATATGAAGCTTCCTCAGGAAACTAGGATGGTGTCACTAATGTCAAATGATTCTGGGTCTGTTTCTGTTAGTAATCAGTCTGAGTTGAACTATCGAAGTTCTGTCAATGGGTTAACTGTGGTGGCTTCTTCACGCTCTTTGATAAACAGCCAATATAGTAATAATGGCCATTCAAATGATATTGTGCTGCCAGTGAAATTTTCTCTGGAAACCAAAGAGAGCACCCGAGTTGGCTTTGGAAAGGTGGAACACAAAACAACTAACAATGTTGGGTACATGGGTTTGTCCTATAAACCTTTGTCATACATTAATAACTATATGCATGGTGATTTTGCTGCATCAGCAGCTGCTAAATTGGCCGTTCTATCCTCAGAGGAATCTAGGTCAGAGGGTCATGTTTCCGACAGTCAGAAGAAAACGATAGCTCAGATCACATATTTGCAAGCAAAAGCGTTCTCACAAATAGCTTCACGTTTCTTTTGGCCAGCTACTGAAAAGAAGCTAATGGAGGTGCCAAGAGAGAGGTGTGGCTGGTGCTTTTCTTGTAAAGCCCCTGTTTCAAGCAAGAGAGGATGCATGTTAAATCATGCCCTTATAAATGCCACAAAAAGTGCGCTGAAAGTTCTTGCTGGTTTTCCTCCACTAAGGAGTGGAGAGGGAATCCTTCCTAGTATTGCAACATACATTTTATACATGGAGGAATGTTTACATGGTTTAATAGTTGGGCCCTTTCTAAGTCCAAGTTATAGAAAGCAATGGCGAATGCGGGTTGAACAGGCCACAACATTTAGCTCTATCAAACCACTCTTGCTTGATCTTGAGGAAAATATTCGCATGATTACTTTCTGCGGGGATTGGCATAAGTTGATGGATGATTGGTTGGTTGAATTTTCTATGATTCAAAGGTCTGCATCTGCTCTTGGAACAACACAGAAACGTGCACCAAGTGGGAGGCGTTACAAGAAACGCTCAGCTACTGAAGAACCTACACCTGATGGTTGCCATGAAAGCTTTGAGTGGTGGCGGGGTGGGAAATTCACCAAGTTTATATTCCAAAAAGCTGTTTTGCCAAGATCCCTGGTCAGGAAAGCTGCACGCCAAGGTGGTTCGAGGAAAATCTCTGGTATTTTCTATGCTGATGGATCTGAAATCCCTAAAAGGACCAGACAGTTTGTGTGGAGAGTTGCAGTACAGATGTGTAAGACTGCATCACAGCTGGCACTTCAGGTCAGATATCTAGATTTTTATATCAGATGGAGTGATCTAATTCGTCCAGAGCAGAATATTCAGGATGGTAAAGGTCAAGAAACTGACGCTTCTGCTTTCAGAAATGCAAATATTTGTGATAAAAAGCTTGTAGAGGGGAAAACTTGTTACGGAGTAGCATTTGGGAGCCAAAAGCATCTTTCTACTCGTTTAATGAAAAATGTTATTGAAATTGAGCAAGGTATAGAAGGAAAGGAAAAGTATTGGTTTCCCGAAACACGCATTCCTTTATATTTGGTGAAAGAGTATGAAGAAAGCAATGGAAACGGACCATCTGTTGGTGAGCACTTGAATACTGCATCACAACAATTGCTCAGTCGGTGGTTGAAAGCATCCCGCAAGGATATTTTTTTCTACCTTACCTGCAAGAGAGACAATTTGGACATGTTCTTGTGTTCTGTATGTCATACTGGTGTTCCATTAAGGAATGCGCTCAAGTGCAATACTTGTCAAGGTTTTTGTCACGAGGGCTGTTCCCTAAGGTCAACAATCTTCACAAATAAGAAAGTTGAGTACTTGACCACGTGCAACCAATGTTATCATGCCAAGTTCCTTGCTCAAAAGGAGACCAGTAATGAATCTCCAACCAGCCCCTTACTCTTACAAGGACGTGAAAACAACTCTCTTCCTATCCTAAAGGGATTAAAGTCTAAATATTCTGATCTAGCACAGAAGTCTGCCAAGGCAAAGGATAGCCGTCCAGAAGCAAAACAAGTTGCTTCAATGACAGTTTTGAAGGAAGCAAAGACTTCCGCCAGGTCAAAGGATAGTCATCCAGACAGAAAACAACTTGCTTCTGGTTCCAGCTCGGCAACCGTAACCCGTCGTAGGAATTGTTCTTGGGGTGTGATATGGAAGAAGAAAAATATTGATGATACAGGCGATGAATTTAGGCTCAAAAACATACTTTTAAAGGGAGCTTCAGGAATTCCTCAAGAGCCACCAATTTGTCACTTGTGCCGTAAGAAATACTGTTCCGATCTGATGTACATTCACTGTGAGTCATGCTCAAATTGGTATCATGCTGAAGCTGTTGAACTCGATGAGTCCAAAATTTTTGATGTACTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAATCACCTGATTGTCCTTATGCTGATACTAAGCGCAAGACACAAGATGGTAAGAGGACAAGGACTTCAAAGAAAGAGTATTCTGGTCCAGATTCTGATTCTGGAACATCAAGTTAG 4323 0.4224 MEPPVVRSRGRPRKRRRKEEEMEALEAKRQALATRSIALVGRFVLKEFPKIGVFLGKVVYYECGLYRVSYEDGDFEDLDSGEVRAVLLNDSDFDDDLTKRKGKLEQLVLKNSVKVQAKSVKASDEMNKDESKVDGPVSGELNGENGEEQAEGGDDLLSDDYSDSDAEAVPAVPPRPPLLQLPPSSGTIGVPEQCVSHLFAVYGFLRSFSTRLFLAPFTLDDFVGCLNCRVANSLIDSIHVSLLRVLRHHLESVSSEGSELASKCLSCCICRCNDWGLLDALTWPVFVIQYLLVNGHTKGPEWKGFYDEAFACEYYLLPVSRKLMILQKLCDDVLDSEELKAEMNMREESEVGVDYDAEDIVAAENGPGKVLPRHANTACEDKGAMKIVLASNFVNQHVNPNNSNSRNAGNIGDGDDRNGDECRLCGMDGTLICCDGCPSAYHSRCIGVMKMHIPEGPWYCPECKINMIGPTVAKGTSLRGAEIFGMDLYGQLFMSSCDHLLVLNVNNDEFCLKYYNQSDIPNVIQVLCGSLQHRPIYYDICMAVMQYWNISERVLPLPPPSSEDGHKPVSLVNGEYSHTLSLIYSGNVVPSYDTSTTNTVNHGPESSGNELPTTNMKLPQETRMVSLMSNDSGSVSVSNQSELNYRSSVNGLTVVASSRSLINSQYSNNGHSNDIVLPVKFSLETKESTRVGFGKVEHKTTNNVGYMGLSYKPLSYINNYMHGDFAASAAAKLAVLSSEESRSEGHVSDSQKKTIAQITYLQAKAFSQIASRFFWPATEKKLMEVPRERCGWCFSCKAPVSSKRGCMLNHALINATKSALKVLAGFPPLRSGEGILPSIATYILYMEECLHGLIVGPFLSPSYRKQWRMRVEQATTFSSIKPLLLDLEENIRMITFCGDWHKLMDDWLVEFSMIQRSASALGTTQKRAPSGRRYKKRSATEEPTPDGCHESFEWWRGGKFTKFIFQKAVLPRSLVRKAARQGGSRKISGIFYADGSEIPKRTRQFVWRVAVQMCKTASQLALQVRYLDFYIRWSDLIRPEQNIQDGKGQETDASAFRNANICDKKLVEGKTCYGVAFGSQKHLSTRLMKNVIEIEQGIEGKEKYWFPETRIPLYLVKEYEESNGNGPSVGEHLNTASQQLLSRWLKASRKDIFFYLTCKRDNLDMFLCSVCHTGVPLRNALKCNTCQGFCHEGCSLRSTIFTNKKVEYLTTCNQCYHAKFLAQKETSNESPTSPLLLQGRENNSLPILKGLKSKYSDLAQKSAKAKDSRPEAKQVASMTVLKEAKTSARSKDSHPDRKQLASGSSSATVTRRRNCSWGVIWKKKNIDDTGDEFRLKNILLKGASGIPQEPPICHLCRKKYCSDLMYIHCESCSNWYHAEAVELDESKIFDVLGFKCCKCRRIKSPDCPYADTKRKTQDGKRTRTSKKEYSGPDSDSGTSS 1440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00060 1440 MobiDBLite consensus disorder prediction 1404 1440 - -
Adu03g00060 1440 MobiDBLite consensus disorder prediction 120 183 - -
Adu03g00060 1440 MobiDBLite consensus disorder prediction 596 615 - -
Adu03g00060 1440 ProSiteProfiles Zinc finger PHD-type profile. 419 466 IPR019787 -
Adu03g00060 1440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 413 468 IPR013083 -
Adu03g00060 1440 MobiDBLite consensus disorder prediction 1404 1430 - -
Adu03g00060 1440 ProSiteProfiles DDT domain profile. 192 252 IPR018501 -
Adu03g00060 1440 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 1438 - -
Adu03g00060 1440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1341 1418 IPR013083 -
Adu03g00060 1440 SUPERFAMILY FYVE/PHD zinc finger 408 465 IPR011011 -
Adu03g00060 1440 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 312 344 IPR028942 -
Adu03g00060 1440 CDD PHD_SF 1352 1399 - -
Adu03g00060 1440 Pfam DDT domain 193 248 IPR018501 -
Adu03g00060 1440 MobiDBLite consensus disorder prediction 1 22 - -
Adu03g00060 1440 MobiDBLite consensus disorder prediction 1262 1307 - -
Adu03g00060 1440 MobiDBLite consensus disorder prediction 121 135 - -
Adu03g00060 1440 Pfam PHD-finger 422 464 IPR019787 -
Adu03g00060 1440 ProSitePatterns Zinc finger PHD-type signature. 422 463 IPR019786 -
Adu03g00060 1440 SMART PHD_3 421 464 IPR001965 -
Adu03g00060 1440 SMART PHD_3 1167 1216 IPR001965 -
Adu03g00060 1440 SMART PHD_3 1352 1400 IPR001965 -
Adu03g00060 1440 Coils Coil 15 35 - -
Adu03g00060 1440 SMART testlast3 192 252 IPR018501 -
Adu03g00060 1440 MobiDBLite consensus disorder prediction 922 947 - -
Adu03g00060 1440 SUPERFAMILY FYVE/PHD zinc finger 1348 1405 IPR011011 -
Adu03g00060 1440 MobiDBLite consensus disorder prediction 147 162 - -
Adu03g00060 1440 PANTHER PHD FINGER FAMILY PROTEIN 1 1438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00060 Adu-Chr3 564863 573304 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00060 27 1436 PHD Transcription Factor Family AT5G35210 42.230 0.0 1000
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Adu03g00060 DDT 2.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00060 - - adu:107476440 2776.89