Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00030 ATGTACCATCATCATCATCAAGGGAAGAACATCCATTCTTCAAGTTCAAGAATGGCAATGTCTTCTGAGAGGCACATGTTCCTTCAAGCTGCTGGAAATGGGTCCGGGGGTGATTCTGGGCTTGTGCTCTCCACAGATGCCAAGCCTAGACTGAAATGGACACCAGATCTTCATGCCAGGTTCATAGAAGCAGTTCATCAGCTTGGTGGAGCTGACAAGGCAACTCCAAAAACAGTGATGAAACTCATGGGAATTCCCGGGCTTACCTTATACCATCTGAAGAGCCATCTTCAGAAGTACAGACTCAGCAAGAATCTGCAAGGACAAAGTAATAACAACGTGCCTCACAAAATTAGTAATCGTCGAATAACAAGTAAGAAATTAAAAAATTTTCACATACATGCTTCTTGTATATATATATATATATATATACACATAAGTGAGGCACTGCAGATGCAGATAGAGGTGCAAAGAAGGCTAAATGAACAACTAGAGGTGCAAAGACACATGCAGGTGAGGATAGAGGCACAAGGGAAGTACCTGCAAGCAGTGCTGGAGAAAGCTCAAGAAACACTTGGGAAACAGGATTTGGGAGTAGTAGGGCTTGAAGCTGCAAAAGTCCAACTCTCTGAGCTTGTTTCCAAAGTTTCCTCTCAGTGCTTGGAGCTTCAAACCAACAACAACCACTTACCAAATAATAACAATAATGACTGCTCCATGGACAGTAACAGTTGCCTCACATCAGAACAAGAGAATCTAAGGCCCTTCATCAATGGCCACCACCATAAATTCATGTTGGAGAGAAACACCACCACCACCACCACCAACTTTCTGACGCCATTAGGGAGCAAGAACAATAATAGTAACAGTGCTGAGAGAAGAAGCTATGTAGTGGAGAGAAGTCCAAGTAACTTGTCTATGAGCATTGGACTTGAAAGGGAGACAGAAGCAGCGATGATGATGAGTAGTGAGAAAGGTTCTCATCATCATCATCATCATCATCATCAAGATTATACGTTGCCACCTTCTTCTTACTTTTCAGCACCAAGGCTTGACCTTAACGCACGTGATCAGGATCAAAGTCATGAAGCAACTGCTGCAACTTGTAAACAGCTGGACTTGAATGGATTCAGTTGGAGCTAA 1143 0.4296 MYHHHHQGKNIHSSSSRMAMSSERHMFLQAAGNGSGGDSGLVLSTDAKPRLKWTPDLHARFIEAVHQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLQGQSNNNVPHKISNRRITSKKLKNFHIHASCIYIYIYIHISEALQMQIEVQRRLNEQLEVQRHMQVRIEAQGKYLQAVLEKAQETLGKQDLGVVGLEAAKVQLSELVSKVSSQCLELQTNNNHLPNNNNNDCSMDSNSCLTSEQENLRPFINGHHHKFMLERNTTTTTTNFLTPLGSKNNNSNSAERRSYVVERSPSNLSMSIGLERETEAAMMMSSEKGSHHHHHHHHQDYTLPPSSYFSAPRLDLNARDQDQSHEATAATCKQLDLNGFSWS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00030 380 MobiDBLite consensus disorder prediction 320 345 - -
Adu03g00030 380 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 48 103 IPR006447 GO:0003677
Adu03g00030 380 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Adu03g00030 380 MobiDBLite consensus disorder prediction 1 20 - -
Adu03g00030 380 MobiDBLite consensus disorder prediction 275 301 - -
Adu03g00030 380 Pfam MYB-CC type transfactor, LHEQLE motif 144 191 IPR025756 -
Adu03g00030 380 Pfam Myb-like DNA-binding domain 50 101 IPR001005 -
Adu03g00030 380 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 380 IPR044848 GO:0003700
Adu03g00030 380 PANTHER MYB-RELATED PROTEIN 2 4 380 - -
Adu03g00030 380 Coils Coil 147 167 - -
Adu03g00030 380 Gene3D - 47 106 - -
Adu03g00030 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 105 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00030 Adu-Chr3 299205 301918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00030 80 379 G2-like Transcription Factor Family AT3G04030 44.706 4.40e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Adu03g00030 Myb_DNA-binding 9.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00030 - - gmx:100810396 401.364