Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00014 ATGCCACGGGGAAAGGCAAATTCTTCATCAGTTGCTAAGCCATCCGAGCCTGAAAATCCAGCTGAATCTGATGAAAAGATCGATTTTGATGATGCAAATGATGCTGAGGAAACAATGGAAGAAGAAATTGAATATGAAGAAGTAGAAGAAGAAGAGGAAGTGGAAGAAATAGAAGAGGTGGAAGAAGAGGAAGAGGATCCGGAGGAGGTTGAGGTGGTGGAGGAGGAAGAGGAGGAAGAGGATCCGGAGGAGGTGGAAGAGGTTGAAGAAATGGAAGAAGATAATAGCATGCAAAACAGTAGCAAGGCAGAAGATAAGGATGAGAAGAAAAAGCATGCTGATCTTCTATCTCTTCCTCCTCATGGGTCTGAAGTATATATTGGTGATATTCCACTTGATGCCTCGACTGAGGATTTGAAAGCATTTTGTGAGTCTATTGGGGAAGTTGCAGAGGTTCGTGTAATGAAAGGAAAAGATTCTTCTGAGAATAAGGGATTTGGTTTTGTGACATTTAAAAGTGTGGAATTGGCTTCTAAAGCCATCAAGGAGCTGAACAGTAAAGCATTTAAGGGTAGAAAAATAAAATGTTCAACAGCTCAAGCAAAACACCGTCTTTTTATTGGCAATGTTCCCAGAAACTGGGGTGATGAAGATCTCAGGAAGGTTGTATCTGATGTTGCACCTGGAGTTACTGGTTTAGAACTAGTCAAGGATATGAAGAACACTAAAAATAACCGTGGATTTGCTTTTATTGACTATTATAATCATGCATGTGCTGAATATTCAAGACAAAAGATGATGAGCTCAACATTTAAGCTAGGTGACAATGCTCCAACGGTGAGCTGGGCTGACCCTAAAAATGCTGATTCCTCTGCTTCATCTCAGGTGAGGGCAGTATATGTGAAGAACTTGCCTAGGAATGTAACTCAGGAGCAGATGAAGAAGCTTTTTGAACACCATGGGAAGATCACAAAGGTGGTTCTTCCACCACCAAAGTCTGGGCAGGAAAAGAATAGAATAGGTTTTGTACATTTTGCAGAGAGGTCAAGTGCTATGAAAGCACTAAAAAACACTGAAAGATATGAATTAGAAGGTCAAATTTTGAACTGCTCTCTAGCAAAGCCACAGGCTGATCAAAAGTCTGGAGGATCAAACTTGCAGAAGCCAGGATTGCTTCCAAGCTATTCCCCACATGTTGGTTACGGTTTGGTTGGTGCCCTTGGCGCGGGATATGGTTCCCCAGGTTTTGCACAGATGCCCTCAATGTATGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATGCCTATGCTTCTGGCCGACGGTCGGATTGGATATGTCTTGCAACATTCAGGTCAGGGAGTGCACTCACGAACACCACCCTTCTTTCAGAGAGGTGGCTGGGGTGGTGGTGGTGGGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGGCACAATAA 1467 0.4145 MPRGKANSSSVAKPSEPENPAESDEKIDFDDANDAEETMEEEIEYEEVEEEEEVEEIEEVEEEEEDPEEVEVVEEEEEEEDPEEVEEVEEMEEDNSMQNSSKAEDKDEKKKHADLLSLPPHGSEVYIGDIPLDASTEDLKAFCESIGEVAEVRVMKGKDSSENKGFGFVTFKSVELASKAIKELNSKAFKGRKIKCSTAQAKHRLFIGNVPRNWGDEDLRKVVSDVAPGVTGLELVKDMKNTKNNRGFAFIDYYNHACAEYSRQKMMSSTFKLGDNAPTVSWADPKNADSSASSQVRAVYVKNLPRNVTQEQMKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSSAMKALKNTERYELEGQILNCSLAKPQADQKSGGSNLQKPGLLPSYSPHVGYGLVGALGAGYGSPGFAQMPSMYGXXXXXXXXXXDAYASGRRSDWICLATFRSGSALTNTTLLSERWLGWWWWEXXXXXXXXXXXKAQ 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00014 488 Coils Coil 38 66 - -
Adu03g00014 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 285 IPR000504 GO:0003723
Adu03g00014 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 201 IPR000504 GO:0003723
Adu03g00014 488 Gene3D - 204 284 IPR012677 -
Adu03g00014 488 SMART rrm1_1 298 371 IPR000504 GO:0003723
Adu03g00014 488 SMART rrm1_1 204 281 IPR000504 GO:0003723
Adu03g00014 488 SMART rrm1_1 124 197 IPR000504 GO:0003723
Adu03g00014 488 CDD RRM_SF 125 197 - -
Adu03g00014 488 MobiDBLite consensus disorder prediction 1 119 - -
Adu03g00014 488 SUPERFAMILY RNA-binding domain, RBD 290 396 IPR035979 GO:0003676
Adu03g00014 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 375 IPR000504 GO:0003723
Adu03g00014 488 MobiDBLite consensus disorder prediction 23 94 - -
Adu03g00014 488 Gene3D - 9 203 IPR012677 -
Adu03g00014 488 PANTHER RNA RECOGNITION MOTIF 1 425 - -
Adu03g00014 488 SUPERFAMILY RNA-binding domain, RBD 120 289 IPR035979 GO:0003676
Adu03g00014 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 195 IPR000504 GO:0003723
Adu03g00014 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 271 IPR000504 GO:0003723
Adu03g00014 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 366 IPR000504 GO:0003723
Adu03g00014 488 SMART rrm2_1 124 197 IPR003954 GO:0003676
Adu03g00014 488 SMART rrm2_1 298 371 IPR003954 GO:0003676
Adu03g00014 488 MobiDBLite consensus disorder prediction 95 117 - -
Adu03g00014 488 Gene3D - 285 391 IPR012677 -
Adu03g00014 488 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00014 Adu-Chr3 189445 194104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00014 145 420 Eukaryotic Initiation Factors Gene Family AT4G34110 25.079 2.92e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00014 K13161 - gmx:100785076 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g00014 03 189445 194104 Adu03g00014 03 189445 194104 ECH