Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g02850 ATGATGAACCCTAACCCTAATAATAAAGGGAGTGAAGAAGGAGGAGTAATCCAGAAGAAAAAGAGAAACCATCCAGGAACACCAGACCCGGAAGCGGAGGTAATAGCGCTGTCGCCCAAGACGCTAATGGCCACAAACAGGTTCATATGCGAGATATGCAACAAAGGGTTCCAGAGGGACCAGAACCTTCAGCTGCACAGGAGGGGACACAACCTGCCATGGAAGCTGAGGCAGAGATCCAACAAGGGCTCCAAGAAGTACGCCGTCCAATCCGATTGGAAGGCTCACAGCAAGACCTGCGGCACTCGCGAGTACAAATGTGATTGCGGCACCCTCTTCTCCAGGAAGGATAGCTTCATCACCCACAGAGCTTTCTGCGATGCTTTGGCTCTCGAGACCTCCTCCCTTCTCCTTCCCCCCTCCACTACAAATCTCAATTTCCACACCCAACAACCACCTCCTCCTCCTTCTCATGCCCTCATTCCTCCTCTTCATTTCAATCACTCCCCTAACTTATCCCTATGGCTCAACCATCATCAACAACACGCCACTTCCTCTCATGATAATAATAGTAATCTTGTCGGACTCTATCATCACAATGCGTCTTCTTCCTTGCCTTTACCTGACATTGTGCAAATGAATAACTTCACCCACAATAGTAATAGTGCAAACCACCTTTCACTCTCTTCCTCCTCACTACCTGCTATTGGAAAATCATCAGATAACTTGGCTTCTATTTATACTTCTGACGGTCAAAGCACCACCACCGATAACAATAACAACCAATTATCTCCCATGTCAGCAACCGCACTTCTTCAGAAAGCAGCTCAGATGGGTTCCACAAGATCAACCACCACTCCTTCCATTTTCAGTGCTACTTTTGGGGTAATGACCTCATCATCATCTAATAATTCAAACCATGCTCATGCTGGGGATTTTGCTTCAACTAGTAGCTTCACCTCATTCACGCATTCTTCCAACACTTATGATCAGCTAGTTATGCAAACTGCAGCACAAAATAGTACCACGGATCCTGCGGGGAACTTGAAGCTCCCTCATCATGCCGGTTCAAACTCAGCGTCGATGGAACATAACTTGACGAGAGATTTTCTCGGGGTCAGCGGTGCTGGTGAAGGACCCGCTGGCCTTCATCAGTTCCTACCACAAGAGCTTGCAAAGTTTGCTTCTTCCATGGGGCTCACCCAATTCACTACCAATTAG 1221 0.4758 MMNPNPNNKGSEEGGVIQKKKRNHPGTPDPEAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKGSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALALETSSLLLPPSTTNLNFHTQQPPPPPSHALIPPLHFNHSPNLSLWLNHHQQHATSSHDNNSNLVGLYHHNASSSLPLPDIVQMNNFTHNSNSANHLSLSSSSLPAIGKSSDNLASIYTSDGQSTTTDNNNNQLSPMSATALLQKAAQMGSTRSTTTPSIFSATFGVMTSSSSNNSNHAHAGDFASTSSFTSFTHSSNTYDQLVMQTAAQNSTTDPAGNLKLPHHAGSNSASMEHNLTRDFLGVSGAGEGPAGLHQFLPQELAKFASSMGLTQFTTN 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g02850 406 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Adu02g02850 406 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 82 399 - -
Adu02g02850 406 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 82 - -
Adu02g02850 406 Gene3D Classic Zinc Finger 36 126 - -
Adu02g02850 406 PANTHER ZINC FINGER PROTEIN JACKDAW 82 399 IPR033243 GO:0003700
Adu02g02850 406 PANTHER ZINC FINGER PROTEIN JACKDAW 3 82 IPR033243 GO:0003700
Adu02g02850 406 MobiDBLite consensus disorder prediction 1 31 - -
Adu02g02850 406 Pfam Zinc-finger double-stranded RNA-binding 48 70 IPR022755 -
Adu02g02850 406 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 70 IPR013087 -
Adu02g02850 406 SUPERFAMILY beta-beta-alpha zinc fingers 47 123 IPR036236 -
Adu02g02850 406 MobiDBLite consensus disorder prediction 14 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g02850 Adu-Chr2 94130441 94131829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g02850 17 154 IDZ Gene Family AT5G66730 58.421 9.98e-68 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu02g02850 zf-C2H2_jaz 5.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g02850 K25870 - adu:107463670 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu02g02850 02 94130441 94131829 Adu02g02850 02 94130441 94131829 ECH
Adu06g01455 06 25856233 25858643 Adu02g02850 02 94130441 94131829 PCT