Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g02797 ATGTCTAATCCCTATGATCACGGAGCTTCTCCATTTATGCACCTAAGTGAGAGAGAGAGAGAGAGAGTGAAACTCTTCCAAAGAAGCAGAAGAATAATGTTCCAAAGAAGGTGCATTGTGGTAACAATAACATATGTATTATTTGGATGCATTATTGTGGATCATGGAAGAGCAACAATGGTGAATCTCACACTCCAAGGACAACATCCAAACCCTGAAGCTCTTGTTACACAACTTCATAGTAAGATTAATGCTTCAATAGCAAGAAGGGAGATGTTAGCATCATCATCATCATCATGCCTAACAGGGAACCCCATTGATGATTGCTGGAAATGTGACCCAAATTGGGCCCAAAACAGACAAAGGCTAGCCGATTGCGCAATTGGGTTCGGTCAAAACGCAAAGGGGGGAAAAGGTGGCGAGTTCTACATAGTAACCGATTCGTCGGACAATGATGCTGTAAACCCTAAACCCGGAACCCTAAGATATGCCGTGATTCAAAATGAGCCACTTTGGATAGTGTTTCCTAGTAACATGATGATTAAGCTTTCACAAGAACTCATCTTCAATAGCTTCAAGACCATTGATGGGCGTGGTGCTGATGTGCACATTGTTGGTGGAGGGTGCATTACTCTTCAATATATTAGCAATGTTATCATACATAACATTCACATTCACCATTGTCACCCCTCAGGTAATGCTATGGTGCGATCGAGTCCAGAGCACTATGGATACCGCACTGAATCGGACGGTGATGGCATATCCATATTTGGATCGCATGACATCTGGATCGATCACTGCACTCTATCTCGTTGCAAGGATGGGCTTATTGATGCAGTTATGGGCTCAACTGCCATCACTGTGTCCAACAACCACTTTTCTCATCACAATGACGTAATGCTCTTGGGCCATAGTGACCACTACTTACCTGACTCAGCCATGCAGGTTACCATTGCCTTTAACCATTTCGGCGAAAAACTCGTCCAGCGCATGCCACGTTGCAGGCTAGGATATGTTCACATAGTCAATAACGACTTCACTGCTTGGCAGATGTATGCGATCGGGGGCAGTGGATCCCCTACTATTAATAGTCAGGGGAATCGATACACTGCTCCCGACAACTCATTTGCCAAGCAAGTGACAAAGCGGTTGGATGTCGGGGAAGGCGAGTGGACAGGGTGGAATTGGAGGTCAGAAGGGGATGTGATGGTGAATGGAGCATTCTTTGTTCCATCAGGGGAAGGTGCTGAGGTTAAGTATGAGAAGGCTTATAGTGTGGAGCCTAAGTCTGCTGATCGCATTTCATTGCTTACTATGTCTGCTGGAGTTCTTGGTGTGGCTAGGGACAATAACCTTGGCATGTGGACTAGAGGACCCAACGATGGTGGCAGTTATATTTCAACAAACGGTCCAGAATTCACTGATGAAATGTCAAAGGCTGCAATGCTGTTTCCACCTTCACATACTTTCACATTTGTATCTGTTCTTGTTACAATGCTCTGCTTGTTATCTCACACAATTACTCCCCTAATAACATTAGTACTATAA 1548 0.4451 MSNPYDHGASPFMHLSERERERVKLFQRSRRIMFQRRCIVVTITYVLFGCIIVDHGRATMVNLTLQGQHPNPEALVTQLHSKINASIARREMLASSSSSCLTGNPIDDCWKCDPNWAQNRQRLADCAIGFGQNAKGGKGGEFYIVTDSSDNDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNAMVRSSPEHYGYRTESDGDGISIFGSHDIWIDHCTLSRCKDGLIDAVMGSTAITVSNNHFSHHNDVMLLGHSDHYLPDSAMQVTIAFNHFGEKLVQRMPRCRLGYVHIVNNDFTAWQMYAIGGSGSPTINSQGNRYTAPDNSFAKQVTKRLDVGEGEWTGWNWRSEGDVMVNGAFFVPSGEGAEVKYEKAYSVEPKSADRISLLTMSAGVLGVARDNNLGMWTRGPNDGGSYISTNGPEFTDEMSKAAMLFPPSHTFTFVSVLVTMLCLLSHTITPLITLVL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g02797 515 Pfam Pectate lyase 187 367 IPR002022 -
Adu02g02797 515 Gene3D - 103 445 IPR012334 -
Adu02g02797 515 PRINTS Pollen allergen Amb family signature 126 143 IPR018082 -
Adu02g02797 515 PRINTS Pollen allergen Amb family signature 150 175 IPR018082 -
Adu02g02797 515 PRINTS Pollen allergen Amb family signature 186 202 IPR018082 -
Adu02g02797 515 PRINTS Pollen allergen Amb family signature 250 271 IPR018082 -
Adu02g02797 515 PRINTS Pollen allergen Amb family signature 330 349 IPR018082 -
Adu02g02797 515 PRINTS Pollen allergen Amb family signature 352 371 IPR018082 -
Adu02g02797 515 PRINTS Pollen allergen Amb family signature 394 418 IPR018082 -
Adu02g02797 515 PRINTS Pollen allergen Amb family signature 423 446 IPR018082 -
Adu02g02797 515 PANTHER PECTATE LYASE 35 468 - -
Adu02g02797 515 SUPERFAMILY Pectin lyase-like 95 431 IPR011050 -
Adu02g02797 515 SMART amb_all 178 375 IPR002022 -
Adu02g02797 515 PANTHER PECTATE LYASE 18-RELATED 35 468 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g02797 Adu-Chr2 93682206 93685717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g02797 32 507 Polysaccharide Lyase AT3G53190 69.087 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g02797 K01728 - gmx:100815062 771.541