Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g02643 ATGGATCATGGAATTGATGTTCCACCATTTTTTGTTTGTCCAATTTCATTGGAGATCATGAAGGATCCGGTGATTGTATCCACAGGAATCACCTATGATAGAGAGAGCATTGAGAAGTGGTTATTGAAGAACAAGACATGCCCGGTGACCAAGCAAACCCTTGAGATTTTAGACCTAACTCCTAATCACACTCTTAGGAGATTGATTCAAGCATGGTGCACTTTGAATGCTTCTCATGGAGTTGAAAGAATTCCAACACCAAAGCCTCCGGTCAATAAAGAACAGGTATCAAAGCTCATCAAAGATGCTTCTTCTAATGATCAAGATTCTTCATTGCTTTCTCAGTGCCTTGTGAGCCTTAAATCGATGGCGGCCGAGAGCGAATCGAACCGGAGATGCATTGAATCAGCTGGAGCTGTTGAGTTCTTAGCTTCAATAGTTGTGATGAATCATGGTTATGATTCAATTGAGGTTAGTTCTGATGGAGATGAAGGTTTCGACACGAAATCGGGCGTTTCGGATGAAGCTTTGAGCATACTAAACAATCTTCATTTGTCAGAAAATGGTTTGAAGGCCTTATTAGGGTTCAAAGATGGAATCTTTGTTGATTCCTTGACAAGGGTCTTGCAAAGAGGAATCTATGAATCAAGGGCTTATGCAGTTTTCTTGTTGAAATCCATGTCCCAAGTTGCAAACCCTAACCAGCTAGTGAATCTTAGAAATGAATTGTTTGTGGAATTGGTTCAAGTTCTAAAGGATCAAATCTCACAAAAAGCTTCAAAGGAAACACTAGAAACCCTAATTGAGATTTGTCCATGGGGCAGAAACCGGATCAAAGCGGTCGAATCCGGGGCGATCCATGTCCTTATTGAGCTTCTTCTTGATTGCAAAGAGAAGAAGCCATGTGAGATGATGATGGTGGTCTTGGATATTCTATGCCAAACTGCTGATGGAAGAGCTGAGCTTCTCGGCCACGCTGCCGGCGTGGCCGTCGTTTCGAAGAAGATTCTTAGGGTTTCAACATTGGTGAATGATAGGGCTGTGAAGATTTTGCTCTCAATTGCAAGGTACTCAGCAACACAAAGTGTTGTTCAAGAAATGTTGCTAATTGGTGTTGTTGCTAAACTTTGTTTGGTTCTTCAAGTTGATAGTGGAAACAAGGCTAAGGAGAAAGCAAGGGAAATTCTCAAGCTTCATTCTAAAACATGGAGGAATTCTCCTTGTTTACCTACCAATTTTCTTTCTGCTTACCCTACAAATTAG 1263 0.4133 MDHGIDVPPFFVCPISLEIMKDPVIVSTGITYDRESIEKWLLKNKTCPVTKQTLEILDLTPNHTLRRLIQAWCTLNASHGVERIPTPKPPVNKEQVSKLIKDASSNDQDSSLLSQCLVSLKSMAAESESNRRCIESAGAVEFLASIVVMNHGYDSIEVSSDGDEGFDTKSGVSDEALSILNNLHLSENGLKALLGFKDGIFVDSLTRVLQRGIYESRAYAVFLLKSMSQVANPNQLVNLRNELFVELVQVLKDQISQKASKETLETLIEICPWGRNRIKAVESGAIHVLIELLLDCKEKKPCEMMMVVLDILCQTADGRAELLGHAAGVAVVSKKILRVSTLVNDRAVKILLSIARYSATQSVVQEMLLIGVVAKLCLVLQVDSGNKAKEKAREILKLHSKTWRNSPCLPTNFLSAYPTN 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g02643 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 75 IPR013083 -
Adu02g02643 420 Pfam U-box domain 7 74 IPR003613 GO:0004842|GO:0016567
Adu02g02643 420 ProSiteProfiles U-box domain profile. 6 79 IPR003613 GO:0004842|GO:0016567
Adu02g02643 420 SUPERFAMILY ARM repeat 95 402 IPR016024 -
Adu02g02643 420 PANTHER WDSAM1 PROTEIN 4 418 IPR045185 GO:0061630
Adu02g02643 420 SMART Ubox_2 10 72 IPR003613 GO:0004842|GO:0016567
Adu02g02643 420 CDD RING-Ubox_PUB 11 52 IPR045210 -
Adu02g02643 420 Gene3D - 76 402 IPR011989 -
Adu02g02643 420 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 4 418 - -
Adu02g02643 420 SUPERFAMILY RING/U-box 5 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g02643 Adu-Chr2 92178936 92180645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g02643 1 418 U-box Gene Family AT3G52450 55.125 6.09e-168 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g02643 - - gmx:100809123 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu02g02643 02 92178936 92180645 Adu02g02643 02 92178936 92180645 ECH