Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g02617 ATGATGCTGCCACTAAACAAGACAGCAGATGATGGACCAACTTACGTGAATGCTAAGCAATACCATGGAATCATAAGGCGTAGGCAGTCACGTGCTAAAGCTGTTCTTGCCAATAAACTCATAAAACGTTGCAAGTTGTTTGTGTTGCGGCCATATATGCATGAATCGCGCCATCTCCACGCGATGCGACGGCTAAGAGGATGTGGTGGCCGGTTGTTGAACAAGAAACTCTGCCACCAACAATGGAAATGGCAAGAGTGGAAGTGA 267 0.4682 MMLPLNKTADDGPTYVNAKQYHGIIRRRQSRAKAVLANKLIKRCKLFVLRPYMHESRHLHAMRRLRGCGGRLLNKKLCHQQWKWQEWK 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g02617 88 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-10 1 78 - -
Adu02g02617 88 PRINTS CCAAT-binding transcription factor subunit B signature 13 35 IPR001289 GO:0003700|GO:0006355
Adu02g02617 88 PRINTS CCAAT-binding transcription factor subunit B signature 49 72 IPR001289 GO:0003700|GO:0006355
Adu02g02617 88 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 13 71 IPR001289 GO:0003700|GO:0006355
Adu02g02617 88 ProSiteProfiles NF-YA/HAP2 family profile. 10 75 IPR001289 GO:0003700|GO:0006355
Adu02g02617 88 SMART cbf3 9 75 IPR001289 GO:0003700|GO:0006355
Adu02g02617 88 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 78 IPR001289 GO:0003700|GO:0006355
Adu02g02617 88 Gene3D - 10 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g02617 Adu-Chr2 91927786 91928192 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g02617 1 76 CCAAT-HAP2 Transcription Factor Family AT3G05690 62.025 5.20e-27 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Adu02g02617 CBFB_NFYA 8.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g02617 K08064 - gmx:100808195 113.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu10g02489 10 101154517 101158667 Adu02g02617 02 91927786 91928192 PCT