Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g02542 ATGGTTCGCTTTGACCGGTTTGGTCCGGTTCGAAGAACCACCAGTAGCTTCTACCAGCGCCTCCTCAAAACTCAGGGTGGATACCGGCGTAAAGCATGCTATGAAGTGTGGGAGAACCGCGTAAGAATAGAAGGGATTAAGGGTTTCTTCAATCTACTTTTTAGGCATTTTCGCTCATTCGACAATGGCAACATGATTCTTCTCCAAATCAACCCAATACATTGTGAAGGTTGGAATACCAGAATTTCTAACTCCTTGCAAACATGGCTGAAAGAAGGTAGGGATGAAATGAAGGAGAAGATGGATGAATGTGATGTTGCTGCTGCTGCTGTGATGGTGCTTTGGTGGTGGGCGAGGAAGTTAATATTGAAATATGCACACAAATATAGGCTTGGATTATGGAGGCCACAAGAGCAAGCAGCAGCAGCTACAAGCGCCTCCTCAAATCTCAGGATGGATACTGGCATAAAGCACGCTATCGTTGTCAAGGTTATGGGTCGCACTGGGTCTAGAGGGCAAGTGACCCAGGTTAGAGTCAAGTTTCTGGATGATCAGAATCGCCACATCATGAGGAATGTGAAGGGACCAGTGAGAGAAGGTGACATTCTCACCCTACTTGAGTCTGAGAGAGAAGCAAGAAGATTGCGCTAG 651 0.4654 MVRFDRFGPVRRTTSSFYQRLLKTQGGYRRKACYEVWENRVRIEGIKGFFNLLFRHFRSFDNGNMILLQINPIHCEGWNTRISNSLQTWLKEGRDEMKEKMDECDVAAAAVMVLWWWARKLILKYAHKYRLGLWRPQEQAAAATSASSNLRMDTGIKHAIVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g02542 216 Hamap 30S ribosomal protein S28e [rps28e]. 152 216 IPR000289 GO:0003735|GO:0005840|GO:0006412
Adu02g02542 216 Pfam Ribosomal protein S28e 156 215 IPR000289 GO:0003735|GO:0005840|GO:0006412
Adu02g02542 216 SUPERFAMILY Nucleic acid-binding proteins 153 216 IPR012340 -
Adu02g02542 216 ProSitePatterns Ribosomal protein S28e signature. 207 215 IPR028626 -
Adu02g02542 216 PANTHER 40S RIBOSOMAL PROTEIN S28 152 216 - -
Adu02g02542 216 PANTHER 40S RIBOSOMAL PROTEIN S28 152 216 IPR000289 GO:0003735|GO:0005840|GO:0006412
Adu02g02542 216 Gene3D - 149 216 IPR012340 -
Adu02g02542 216 CDD S1_S28E 157 216 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g02542 Adu-Chr2 91220200 91230464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g02542 152 216 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 2.10e-33 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g02542 K02979 - egr:104443388 103.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu02g02542 02 91220200 91230464 Adu02g02542 02 91220200 91230464 ECH