Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g02457 ATGAGTGATAACATAGTCTCATCAACACAAACCTTTAATATTAAGTACAACAATACTATCACATTTTCTTCAACAAGTGGAATCTCTTCTTCTTCTTCTCATCATCATAATCATCAAGATTATGGGGTTATCAAAGAGCAAGATCGGTTGCTTCCAATTGCAAATGTTGGGAGAATCATGAAGCAAATCCTTCCAACAAATGCAAAGATCTCAAAGGAAGCAAAGGAGACTATGCAAGAGTGTGTTTCTGAGTTCATAAGCTTTGTGACTGGTGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAGACCGTTAATGGTGATGATATTTGTTGGGCCTTGGCTACTCTAGGGTTTGATGATTATGCTGAGCCACTCAAAAGTCGCGGAACCCGCCACTACACCTACTTGTTCGTTGTTCGAGCCTCCTCTTTGCGATCCCAGGGGACCGTCTTTGCGATCCCAGGGGACCGCCGCAAGGAGAGGAGATGGCATGGCCAAGATTGGAAAAACGTGCTGGAACCTTCCGCCACATCTTCAAGGATCTTCGGTGCCAGTCGCTGCTGCCACTCCGTCAACTCAGGGAGTCGCGAGCATTTGCTCTCCCTTCACGGAGGTGCCGTCCTCGGTGTCACTACCGAGGGACAGCTCTGCTGGTGTTTTATCATCGTCGCCGCTGCCTTTGTTCAGCGCATTGAAGCTTTATTGGAGCCGACTAAGACCACCGTGTTCGAGTTAAGATGCGGTGGGTTTGGTGGTGGTTGCGGCACCCTCATCCACTGCTCGTACATCAATCTCGACACCGTCAATCACAATCGCGCTAGTTTGATTTTTGGACACATTCTGCGACTGCATTCTCTGATTCTGCATCCTCATAATCTAAACCTGAAATATGAAATTGTAGAATTATCTAGTTTGTCTATTGATGATTTTGGTTCTGGATAA 945 0.4635 MSDNIVSSTQTFNIKYNNTITFSSTSGISSSSSHHHNHQDYGVIKEQDRLLPIANVGRIMKQILPTNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKSRGTRHYTYLFVVRASSLRSQGTVFAIPGDRRKERRWHGQDWKNVLEPSATSSRIFGASRCCHSVNSGSREHLLSLHGGAVLGVTTEGQLCWCFIIVAAAFVQRIEALLEPTKTTVFELRCGGFGGGCGTLIHCSYINLDTVNHNRASLIFGHILRLHSLILHPHNLNLKYEIVELSSLSIDDFGSG 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g02457 314 ProSitePatterns NF-YB/HAP3 subunit signature. 81 97 IPR003956 GO:0005634|GO:0006355|GO:0043565
Adu02g02457 314 Gene3D Histone, subunit A 38 137 IPR009072 GO:0046982
Adu02g02457 314 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 50 114 IPR003958 -
Adu02g02457 314 SUPERFAMILY Histone-fold 47 129 IPR009072 GO:0046982
Adu02g02457 314 PRINTS CCAAT-binding transcription factor subunit A signature 116 134 - -
Adu02g02457 314 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Adu02g02457 314 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Adu02g02457 314 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 28 129 IPR027113 GO:0001228|GO:0006355|GO:0016602
Adu02g02457 314 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 28 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g02457 Adu-Chr2 90329388 90334933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g02457 29 127 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.775 2.29e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Adu02g02457 CBFD_NFYB_HMF 5.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g02457 K08065 - mnt:21392404 177.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu02g02457 02 90329388 90334933 Adu02g02457 02 90329388 90334933 ECH
Adu01g00529 01 7224263 7227084 Adu02g02457 02 90329388 90334933 ECH
Adu07g01174 07 17517438 17519537 Adu02g02457 02 90329388 90334933 ECH