Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g02442 ATGTCGTTTAGGAGTATAATCTTTGATATGAAGGGTTTGAGATCCAGGTCACAATCACACCACAGAGATGGTGTTGGTGGTGTTGTTAGTGTTAGTGAGGGTGGTGGTTTGGTGGTTCTTGATGGGTTGAAGCAGAGTTGTTGGGCTAACATGCCACCTGAGCTATTGAGGGATGTGCTCTTGAGGATTGAGGCCTCTGAAGATGCCTGGCCTGCCCGGAAACATGTCGTTGCCTGTGCCGGCGTATGTCGCAGCTGGAGGGAGATCATGAAGGAAATTGTCAAGTCCCCTCAAATTTCCAGCAAGCTCACATTCCCAATCTCATTGAAGCAGCCTGGTCCAAGAGATTCTCTTCTCCAGTGTTATATTAAACGCAATCGTAGTAATCAAACATATTATCTGTACCTTGGTTTAAATCAAGCCTCAACTGATGATGGAAAGTTCCTTCTTGCTGCACGCAAGTGTCGTCGTGCAACTCACACCGACTATATCATCTCTCTTAACTGCGACGACGTATCAAGAGGGAGTAGCACCTATATTGGAAAACTCAGATCAAACTTTCTGGGGACTAAGTTCACCATATATGATGCGCACCCTCCACTTTGTGGAGCTTCCAAAGTTACAAAGTCTCGTTCCACCAGGCTGGTTAGTCTTAAGCAAGTGTCTCCAAGAGTTCCTGCCGGCAACTATCCCATTGCGCATGTTTCGTATGATCTGAATGTTTTGGGATCCAGGGGCCCTAGGATAATGCAATGTGTTATGGATGCCATCCCCGCATCGGCTGTTGAACCAGGAGGTGTAGCTCCAACACAGACTCATTTTCTTCATAGCCGAATTGAAACTTCTCCATCTATTCCCTTTTTTAGATCAAAATCAACCCGTGTCGACAATCTCCAACTGGTTCCTTCGACTACTCAAAACGAGGGAATGCTTGTGTTAAGAAACAAGTCCCCTAGGTGGCATGAACAACTCCAGTGCTGGTGTTTGAACTTCAATGGACGAGTGACAGTAGCTTCGGTTAAAAACTTTCAGCTGGTTGCATCACCGAAAAATGGAGTTTCTGAGCAGGCTCAGGAAAATGTTATTCTACAGTTTGGAAAAGTTGGAAAAGATGTATTCACCATGGATTACCAGTATCCAATCTCTGCCTTCGAAGCATTCGCAATTTGCCTTAGTAGCTTTGACACCAAGATTGCTTGTGAATGA 1206 0.4527 MSFRSIIFDMKGLRSRSQSHHRDGVGGVVSVSEGGGLVVLDGLKQSCWANMPPELLRDVLLRIEASEDAWPARKHVVACAGVCRSWREIMKEIVKSPQISSKLTFPISLKQPGPRDSLLQCYIKRNRSNQTYYLYLGLNQASTDDGKFLLAARKCRRATHTDYIISLNCDDVSRGSSTYIGKLRSNFLGTKFTIYDAHPPLCGASKVTKSRSTRLVSLKQVSPRVPAGNYPIAHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTHFLHSRIETSPSIPFFRSKSTRVDNLQLVPSTTQNEGMLVLRNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g02442 401 SUPERFAMILY Tubby C-terminal domain-like 97 401 IPR025659 -
Adu02g02442 401 Pfam F-box domain 48 94 IPR001810 GO:0005515
Adu02g02442 401 PANTHER TUBBY-RELATED 1 400 - -
Adu02g02442 401 PRINTS Tubby superfamily signature 163 179 IPR000007 -
Adu02g02442 401 PRINTS Tubby superfamily signature 179 203 IPR000007 -
Adu02g02442 401 PRINTS Tubby superfamily signature 229 256 IPR000007 -
Adu02g02442 401 PRINTS Tubby superfamily signature 313 330 IPR000007 -
Adu02g02442 401 PRINTS Tubby superfamily signature 331 347 IPR000007 -
Adu02g02442 401 PRINTS Tubby superfamily signature 358 377 IPR000007 -
Adu02g02442 401 PRINTS Tubby superfamily signature 379 401 IPR000007 -
Adu02g02442 401 Gene3D Tubby Protein; Chain A 105 401 IPR025659 -
Adu02g02442 401 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 1 400 - -
Adu02g02442 401 SUPERFAMILY F-box domain 42 91 IPR036047 GO:0005515
Adu02g02442 401 Pfam Tub family 109 396 IPR000007 -
Adu02g02442 401 ProSitePatterns Tub family signature 2. 386 401 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g02442 Adu-Chr2 90044094 90048091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g02442 1 401 TUB Transcription Factor Family AT2G47900 73.171 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Adu02g02442 Tub 6.7e-109 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g02442 K19600 - gmx:100809257 715.301