Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g02416 ATGGATAAAGCGGTTGATTCCAGTGGTGAGAATAAGCAGGATCAAGGGTGTAAGAACAAGCGAAAATCGGTTCATCCTTCCGTAGCTGTTGCCAGTGCCCCCACATCTTTGATTGAGTTCCCTCGGTATGAATTACCGTTGGAGCTTCCACAAAGCTTAAATGGTACTAATCCATCTGAGGTAGTATCAGATTGGTATAGAGTAGAATCAGAAATGCGTATGAACGAGCTTGTGGATTGGAATGATCCTATTGCAAACCAGCTTGAGGAATTACTGTTGTCTAATTTGCAAGCTGTTTTTCATGCTGCAATCAAGCAGATTGTTGAATTAGGATATGGTGAAGAGGTGGCTCACATGTCCATTTCAAGGAGAGCCTTATACATAGAGGAAGGAGACCCTGTCTCAAATATTGTACAGGATACAGTGAATATTCTTAAGGGAAAAGATGTTGCTGGTTCGGATGTCGTGTTTGAAAATTTTCAGCATTTGCTGTACTACACCATGTTGGAGATGATCAGTGTACTTCGCGAAGTTAGACCGTCCTTAACAGCTGGCGAAGCAATGTGGCTTTTGTTGATGTGTGACTTGAACATCTCACTAGCCTGTTCAGCAGAAGATCGCCCGAGTGGTGTTGTTCAGAATGGGGAAAGCTCTTCTGGTTCTTCTGTTCCCCAGTCAAAGCCAGAGGTTCAAATCTCTGAATCTGACATAATTATTGAGCCAACTGTCCCAAAGGAATTGCCCCATAGTCACCAGAACAAGTCTGAAGCACCTAAGTTCGGAAGTTTCCAGAATACCCCGAACAGTCAAAGTCTTCTTGTTTCAGAAGGGGGAAAGCTTCATAAGGGGAATGCTTCTTTGCTGGTCGCTACAGAGAAATCCACAGGAACTTCAGTGGGTCCTGCTAAGGAATCTAAACCCGGGTCTAGTTCCAAGCGCCATAACAGAAAAGAAATAGTAGCACTTAGGCAGAAGTTCCTTCATATGGAGAAAGCTTACAGGGCTTGTGGAAAAGGTGGTTTTAAATCAGGGAAGCTTACAAGTGTAAGTAGTTTGGTTGTTGAAAAAAGAATCAAGCAACCATCTGAAATTCCTAATCAGCAAATGAAGTGTGGTTCCTCAAATTCAACAAGCACAAAAGGAGTTCACTCAGCTGATGCAGCATGCTGTGTTTCGACCAATAGTTCCTCTACTTCAAATGGAAGAGGTAACACCGGAACATTACCTACAAAGGATGCAACATCTGCTTCTACTGTAGTCAATTCTACTACAGTGTCAGACACTACATCCAAGCCTAAGTCTGAACCTAGTTCCACTGACAATCAAAAGATTCTTGATTTCTGTGCCGGTATTCCTTATGATGAGTCTTTGGGTAAGTATGTGCCAAGAGATGAAAAGGATGAACTAACTTTGATGTTAATAGCTCGCGTGCAAGAATTGCAGTTTGGGATGCAAAGCTGGAACAACTGGACAAAACAAAAAGTTATGCAAGTTACTGAGAGGCTCGGAAAAGTGCAGAGTGAGCTTAAAGCTCTTAGGAAGGAGAAGCAAGAAGCCGACCTATATAAAAAAGATCAGAAACTTTTGGAGGAGAATGCAGTGAAGAGAATCTCTGAGATGGAGAATGCCATGGAGAATACTAGAAAGCAAATTGAGCATGCTACTTCTGCTGCAGTTGAGCTAGAGGCAGAGAACGCTTCGCTGAAGAAGGAATTGGATGATGCGAAGTTGTGGGTTCTAAAGTCGATGACAAGCCATCGACAAGCACTTGAGAGAGAGCAGATTGTTCTTAAACAGCTTCAATCATGGGAGAGCCAAAATGGTTTACTTCGAGATGAGCTTGATGGAGAGAAGCACAGTTTATCTAACCTACTACAAGTGCTACACAAGGAGAAAAATCTTCTAGCCAACATTGAGGGTAGACTGGAACAAGAGAGAGCTGTGAAAGAAAAGCTCCTTGCACAGGCAGCATCCATTAGAAAGGAAAGACAACAACTCGAAGCGCACATCAAATCTGAAGAGGATACTATTAGAAAAAGGGCAGCTAATGATATGCAGAAATATGTGGATGATATTGCAAGGCTTGAGAAAGAGTTGATTGAGTTAAAAATAAAATCCGAGTCTGAACAAATAGCAGCTCTTCGCAGGGGTGTTGATGGTAAAAATGACAAGTTCTCCAGAACCAGCAAAAATACTCTTACGGTGAAGGAGAACAAGAAATCTAATGCGTCCCAAACGATGGTTAGCAATCGAGATAAAATGTCTACCGGAAGCTTGAGGCGAGAGCAGGAGTGTGTCATGTGCCTATCAGACGAGATGTCAGTGGTTTTTCTGCCGTGCGCACACCAGGTTGTTTGTCAAGACTGCAACGAACTCCACGAGAAGCAAGGGATGAAGGATTGCCCTTCATGTAGGACCCCAATCCAACGGAGGATTCATGCAAGATTTGCCGGACATTCGAGGGCATAG 2469 0.4313 MDKAVDSSGENKQDQGCKNKRKSVHPSVAVASAPTSLIEFPRYELPLELPQSLNGTNPSEVVSDWYRVESEMRMNELVDWNDPIANQLEELLLSNLQAVFHAAIKQIVELGYGEEVAHMSISRRALYIEEGDPVSNIVQDTVNILKGKDVAGSDVVFENFQHLLYYTMLEMISVLREVRPSLTAGEAMWLLLMCDLNISLACSAEDRPSGVVQNGESSSGSSVPQSKPEVQISESDIIIEPTVPKELPHSHQNKSEAPKFGSFQNTPNSQSLLVSEGGKLHKGNASLLVATEKSTGTSVGPAKESKPGSSSKRHNRKEIVALRQKFLHMEKAYRACGKGGFKSGKLTSVSSLVVEKRIKQPSEIPNQQMKCGSSNSTSTKGVHSADAACCVSTNSSSTSNGRGNTGTLPTKDATSASTVVNSTTVSDTTSKPKSEPSSTDNQKILDFCAGIPYDESLGKYVPRDEKDELTLMLIARVQELQFGMQSWNNWTKQKVMQVTERLGKVQSELKALRKEKQEADLYKKDQKLLEENAVKRISEMENAMENTRKQIEHATSAAVELEAENASLKKELDDAKLWVLKSMTSHRQALEREQIVLKQLQSWESQNGLLRDELDGEKHSLSNLLQVLHKEKNLLANIEGRLEQERAVKEKLLAQAASIRKERQQLEAHIKSEEDTIRKRAANDMQKYVDDIARLEKELIELKIKSESEQIAALRRGVDGKNDKFSRTSKNTLTVKENKKSNASQTMVSNRDKMSTGSLRREQECVMCLSDEMSVVFLPCAHQVVCQDCNELHEKQGMKDCPSCRTPIQRRIHARFAGHSRA 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g02416 822 ProSiteProfiles Zinc finger RING-type profile. 765 805 IPR001841 -
Adu02g02416 822 SUPERFAMILY RING/U-box 759 811 - -
Adu02g02416 822 MobiDBLite consensus disorder prediction 1 25 - -
Adu02g02416 822 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RF298-RELATED 4 817 - -
Adu02g02416 822 MobiDBLite consensus disorder prediction 209 274 - -
Adu02g02416 822 Coils Coil 678 712 - -
Adu02g02416 822 MobiDBLite consensus disorder prediction 291 305 - -
Adu02g02416 822 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 737 815 IPR013083 -
Adu02g02416 822 Coils Coil 495 578 - -
Adu02g02416 822 MobiDBLite consensus disorder prediction 393 441 - -
Adu02g02416 822 Pfam Family of unknown function (DUF6592) 95 204 IPR046527 -
Adu02g02416 822 MobiDBLite consensus disorder prediction 255 274 - -
Adu02g02416 822 MobiDBLite consensus disorder prediction 291 317 - -
Adu02g02416 822 PANTHER OS05G0141500 PROTEIN 4 817 IPR046934 -
Adu02g02416 822 MobiDBLite consensus disorder prediction 1 21 - -
Adu02g02416 822 MobiDBLite consensus disorder prediction 210 232 - -
Adu02g02416 822 Pfam Zinc finger, C3HC4 type (RING finger) 762 810 - -
Adu02g02416 822 Coils Coil 628 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g02416 Adu-Chr2 89707014 89711534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g02416 765 812 C3H Transcription Factor Family AT1G73950 41.667 7.91e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g02416 - - gmx:100793172 1017.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu02g02416 02 89707014 89711534 Adu02g02416 02 89707014 89711534 ECH