Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g02356 ATGACGATGATTCCATGGGGTGGAATCAGTTGCTGTTTGAGTGCAGCTGCTCTATACCTCCTTGGCAGAAGCAGTGGCAGGGATGCTGAGCTTCTTAAATCTGTAACAAGGGTCAATCAATTGAAGGAGCTGGCACAACTGTTAGATGCGGAAATCTTACCCTTGGTTGTTAGCATTTCTGGGAGAGTCAGCTCTGAAACCCCAATTCACTGTGAGTTCAGTGGTTTAAGAGGAGTAATAGTTGAAGAAACGGCAGAGCAACATTTTCTTAAACACAATGATGCTGGTTCATGGATACAAGATTCTGCTTTAATGCTATCCATGAGTAAAGAAGTTCCTTGGTATCTGGATGATGGAAGTGACCGCGTGCATGTGGTAGGAGCCCGTGGTGCCACAGGATTTGTATTACCTGTTGCAAGTGAGGCATTTGAAGAGTCCGGTAGGTCACTTGTACGTGGTACATTGGATTATCTCCAAGGTCTCAAGATGCTTGGGGTCAAGAGAATCGAACGGGTACTTCCAGTTGGGACTTCCTTGACTGTCGTTGGTGAGGCTGCTAAAGATGACATTGGGACTATTCGAATTCAGCGACCCCACAAAGGGCCATTTTATGTCTCTCCCAAAACACTTGATCAGCTCATCGCAAATCTGGGGAAATGGGCAAGATGGTATAAATATGCGTCTATGGGCTTGACACTATTTGGTGCTTACCTAATAGCTAAGCATGCTATTCGGTTCATCTTGGAAAGACGGCGTCGTTGTGAACTGCAAAAAAGGGTTCTTGCGGCCGCTGCTAAGAGACAAGGACAAGATAATGAAGGTGAAAAAGCTGACACCTCACTAGACGGCATGAAAAGGGACCGTTCAATGCCAGACTTGTGTGTAATATGCCTGGAGCACGAATATAATGCTGTCTTCGTACCATGTGGGCATATGTGCTGCTGTACTACCTGTTCTTCACACTTAAACAATTGTCCTCTTTGCCGGCGGCGGATCGAACAAGTAGTGAAGACTTTTCGTCATTGA 1026 0.4581 MTMIPWGGISCCLSAAALYLLGRSSGRDAELLKSVTRVNQLKELAQLLDAEILPLVVSISGRVSSETPIHCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGSDRVHVVGARGATGFVLPVASEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDIGTIRIQRPHKGPFYVSPKTLDQLIANLGKWARWYKYASMGLTLFGAYLIAKHAIRFILERRRRCELQKRVLAAAAKRQGQDNEGEKADTSLDGMKRDRSMPDLCVICLEHEYNAVFVPCGHMCCCTTCSSHLNNCPLCRRRIEQVVKTFRH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g02356 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 340 IPR013083 -
Adu02g02356 341 Pfam E3 Ubiquitin ligase 87 235 IPR022170 GO:0004842|GO:0006996|GO:0016567
Adu02g02356 341 Pfam Zinc finger, C3HC4 type (RING finger) 292 335 - -
Adu02g02356 341 PANTHER - 3 308 IPR044231 GO:0004842|GO:0016567
Adu02g02356 341 SUPERFAMILY RING/U-box 293 335 - -
Adu02g02356 341 CDD RING-HC_LRSAM1 293 332 - -
Adu02g02356 341 ProSiteProfiles Zinc finger RING-type profile. 294 329 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g02356 Adu-Chr2 88970992 88974950 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g02356 3 274 C3H Transcription Factor Family AT1G63900 77.737 1.70e-155 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g02356 K15688 - gmx:100800734 625.935