Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g02334 ATGGTTCGAGGGAAGACTCAGATGAGACGCATAGAAAACGCCACAAGCAGGCAAGTGACGTTTTCAAAGCGCCGCAATGGGTTGCTTAAGAAAGCGTTTGAGCTTTCTGTTCTTTGCGATGCTCAGGTTGGTCTCATCATCTTCTCTCCAAGAGGCAAGCTTTATGAATTTGCAAGCTCAAGCATGCAGGAGATAATTGAAAGATATCGCAAGCATACAAAGGATACTCCACCAGCAGCCAAATCAGCTGAACAGAATGTGCAGAATTTGAAGCAAGAAGCAGCAACCTTGATGAAAAAGATTGACATTCTTGAAGCCGCAAAAAGGAAATTCTTGGGAGAAGGTTTAGGGTCATGCAGCATTGAAGAACTGATACAGATAGAACAACAATTGGAGAAGAGTGTAAGCATTGTTAGAGCAAGAAAGACTCAGCTTTACAAGGAACAAATTGAGCAACTTAAAGAAAAGGAAAAAACCCTAATGGATGAAAATGCCATGCTCTATGACAAGGGTAAAGATAATATGGTTCAAAATCTAGCAACAAATAAAACAAATAATAAGGATCAGAGAGAGAATCAAGCTCAACCCTATGCAGAAAGTAGTAGTCCAAGTTCAGATGTGGAGACCGAATTGTTCATTGGACTTCCTGAAACAAGAACAAGGCGCATGTCTCCTACAAATTAA 684 0.405 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAQVGLIIFSPRGKLYEFASSSMQEIIERYRKHTKDTPPAAKSAEQNVQNLKQEAATLMKKIDILEAAKRKFLGEGLGSCSIEELIQIEQQLEKSVSIVRARKTQLYKEQIEQLKEKEKTLMDENAMLYDKGKDNMVQNLATNKTNNKDQRENQAQPYAESSSPSSDVETELFIGLPETRTRRMSPTN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g02334 227 Coils Coil 80 107 - -
Adu02g02334 227 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu02g02334 227 MobiDBLite consensus disorder prediction 182 208 - -
Adu02g02334 227 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Adu02g02334 227 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu02g02334 227 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Adu02g02334 227 Coils Coil 143 170 - -
Adu02g02334 227 MobiDBLite consensus disorder prediction 182 227 - -
Adu02g02334 227 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Adu02g02334 227 PANTHER MADS BOX PROTEIN 1 217 - -
Adu02g02334 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Adu02g02334 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Adu02g02334 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Adu02g02334 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Adu02g02334 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Adu02g02334 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Adu02g02334 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Adu02g02334 227 PANTHER MADS-BOX PROTEIN SOC1 1 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g02334 Adu-Chr2 88665378 88673175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g02334 1 158 MADS-box Gene Family AT2G45660 75.949 2.87e-84 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Adu02g02334 K-box 7.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g02334 - - mtr:MTR_8g033220 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu02g02334 02 88665378 88673175 Adu02g02334 02 88665378 88673175 ECH
Adu02g02334 02 88665378 88673175 Adu02g02333 02 88657761 88662200 ECH