LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu02g02289	ATGACTtcttcttcttcttcatccactgctcctcaattcaaatatgacgacaaagtcaataaatggagagctgcactGAAGGGAGTCTCAGATTTATCAGGATTCCATTCCAAAAATTTTAGAAGTGAGGCTGGGCTCATTGAAGAAGTTGTCAAACACATTTTGAAAACTTTAGATGATATGCACCCAGCTTATGACTTTCAAGGCCTTGTTGGAATTAATAAACCAGTCGACGAACTTGAGTCAATAGTTTTTGCCAATGGCTCAAAAGATATTCGTGTTATAGGAATTTGGGGCATGGGTGGCATTGGTAAGACTACTATTGCCACTGTATTATTTAACAAACTGTGTTCTCAATATGAAAGTCGTCATTTTCTAGCAAATGTCAGAAAGGAGTCAGAGAAGTGGGGAATAATTCAGTTAAGAGACAAAATTCTTTCTGTATTCACAGACGAAAAAGATTTAAACATTGGTGTTCCCAACGGAGTACCGAAACATGTTTTGAGAAAACTTCGTCGCAGAAAGATTCTTGTTGTTCTTGACGATGTTAGTACTTCTGATCAAATCACAAACTTAGTTGGAGGACATAATTGGTTGGGTCCTGGTAGTAGAATCATTGTTACAACTAGGGATAAACATGCAATTTGTAAAGCGGATGACATATACAAAGTAAAGGCATTGGAATCTAGTGATGCCCGACAGCTGCTAAGTTTGCATGCCTTTGATGGAACTGATGGGCATTGCCTTGAATTGCACTGGCATAATCTTGTGTCGAaaatggttgaatatgctaaaggcatcccattaggattgaaagttctgggttcttttctttatggcaaatgctttgaagaatgggaatgtcaattccagaagcttcagaaaatgccctttccagagattcataatgtgttgagattaagttatgaaggattggatcaccaagagaagagcatatttttatatgttgcttgtttcttcaaagaggatgaaggaaaggttactgtagagaatttattagatgcttgtggttaCTCAACATCTATTGCATTAAAAACTCTCCAAGATAGAGCTCTTATAAGTATTGAACATTGTGTATCCATGCATGACTTGATTCGAGAAATGGGCCGATGGATTGTGCGTCAACAAAGCATCAATAAGCCTGGAGAACAACGTCATTTATGGGATCCTCATGACATTCATCGTGTATTGAAACATAGAGAGGGCACGGACCATATTGAAAGCTTAACCTGGAACATGTCAAGTGTTAGTGCTGACATAAGCCTAAGTCCTCATTTGTTTGCTAGAATGGAAAATCTAAAACTTCTGAGGTTTTATTACAATAATAATAATAGCAGTGATTATTACTATTATTATTATTATTGTTCGGATAATAGCACGTGCCAAGTGCATCTTCCAGAAGGTCTTGAAATACTGCCACAGAAACTACGACTCTTTCATTGGGACAATTACCCTGCAAAATCCTTTCCAACAACATTCAATGCAGAGTGTCTTGTTGAACTTCGTATGAAAGAAAGTCGCGTTGAAAAGCTCTGGGATGGTGTACAGGATATACCAAATATGAAAAGGATTGTTCTTAATGGATCCAAACAATTGATCGAGATTCCAGATTTATCTAAAGCCTTGAGTCTTCAAGAATTAGAACTCATGGGATGCATAAATTTGCTTTCGGTTCACCCATCAATTTTTTCTCTCCCAAAACTTGTTACGGTGACCCTATGGAATTGCCGAAGGCTTGAGAAACTTCCAGGGTGGTGTGAAGTGAAAAAGGAAGTATTGATTGAAGCATCAGCGTCATCAACATCATCGTGCTCAGGATCATCACATACTTCCCGCTCCAAGTTTCAGTACTTAAACTTGGATGGATGTGTGAATCTGATGCATCTGCCAGACAGCTTTTCTAATCTCACCACTCTTAAAGTGCTTTATCTTGGAGGGTGCATAAAATTAGACACATCAAATCTATACATCTTATTTAATGCCTTGTCTTCTTTAACACAGCTAGACTTGGATGGGTGTGATAAGTTGTATGAAATCCCACATAACATCAGCAACTTATCATTGTTAGAGTCGTTATCACTCAGGGAAACTAATGTGAAGAGCATTCCAGAAACTATCAGACACCTTCCACGCCTCAGAAATCTCTACTTAACCAGTTGCACGGTGCTCCGGTCAATTCCTCGAATTCCACCATCCCTCCATTGTTTAACAGCCAATAACTGCAAATCGTTGGAGAGAGTGTTCACTCCAACACCTGAACTACTCCAACAACACCTCGCATCCTATGAAAAGGAGTATTATATTGGAGGCACGATTTTATTGGAGGAGATACGACCGTGGAGGAGGCTGACCAGCTGCAGAGGAGCAAGAAAAAGCTTTGAAATGATGGGGGCACTTATATCGGAGATACTTCCAGGATCCCCAGAGAGGAGGATTGGATGTACGAGAAGACCACTTTTGTGGGAGCCAAAGGAAGAAGGAATATATGCTGATCTGGTAATTCATCGTAGCATAGAGAAATATGAGGACTCTGAAGACTCGGATGAGGAAATGACCAAGGAAGGGGAGTCTTACGATGAAGAGGAATCGGGGATGACGGAAGAAATGTTTGACTGGAGCCAAGCACAAAGGGAAGCTTACAGGAGGGTACGAAAGGAGGAGAGAGCAATTCCTTCCATCACTGTGAACCGTTTACAGAATGGCATTTTCAACATCCAAGGGGTACTTAAGAGAAGGCTCGACACAATGTGGGCGAAATCTGGAGGGCTAGACTTGATTGATCTAGGGAATAACTTCTTTGCGGTCAGGCTATTCAATGAAGATGACTACTGTCTCTCAGCCCAATCAACCAAAAGAAACCTTGGCCCACTTTTTCCCCATACCTTCCTCAAACATACCCAACCCACTCTTTCAAATGAAACAGTGATAGAGGAGACCCCTATGGACCCAAACCTTAACCCAAAACCTTCGGACCCAAATGTTCCGTACTTCTCTAGATCAGACTTAGATGAATTTATGGCAGAAGGCACTTTGGCTGTGCTGGAATGGGGTAATAGAGATGCTCCCGGGTTCTCAGGAGGATTATGGCTCATATGGAATAATCCCAATCTTTCGATTCAAAAGATAAGTAGAAATGAACAACCTTTGCACATCTCAATTTCAGACAATCTCAGGGAATGGTTCCTTACTATCGTCTATGCTAATCCAAACGAAGAAAGGAAGAAGGAGTTGAGAAATTATATTGCTGATCTAGTCCCTACGATAAACTGTTCTTGGATGCTCTGCGGGGACTTCAATGATATAAGTGACATAAGTGAAAAGAAAGGAGGGCGCTTTACCTAG	3363	0.3693	MTSSSSSSTAPQFKYDDKVNKWRAALKGVSDLSGFHSKNFRSEAGLIEEVVKHILKTLDDMHPAYDFQGLVGINKPVDELESIVFANGSKDIRVIGIWGMGGIGKTTIATVLFNKLCSQYESRHFLANVRKESEKWGIIQLRDKILSVFTDEKDLNIGVPNGVPKHVLRKLRRRKILVVLDDVSTSDQITNLVGGHNWLGPGSRIIVTTRDKHAICKADDIYKVKALESSDARQLLSLHAFDGTDGHCLELHWHNLVSKMVEYAKGIPLGLKVLGSFLYGKCFEEWECQFQKLQKMPFPEIHNVLRLSYEGLDHQEKSIFLYVACFFKEDEGKVTVENLLDACGYSTSIALKTLQDRALISIEHCVSMHDLIREMGRWIVRQQSINKPGEQRHLWDPHDIHRVLKHREGTDHIESLTWNMSSVSADISLSPHLFARMENLKLLRFYYNNNNSSDYYYYYYYCSDNSTCQVHLPEGLEILPQKLRLFHWDNYPAKSFPTTFNAECLVELRMKESRVEKLWDGVQDIPNMKRIVLNGSKQLIEIPDLSKALSLQELELMGCINLLSVHPSIFSLPKLVTVTLWNCRRLEKLPGWCEVKKEVLIEASASSTSSCSGSSHTSRSKFQYLNLDGCVNLMHLPDSFSNLTTLKVLYLGGCIKLDTSNLYILFNALSSLTQLDLDGCDKLYEIPHNISNLSLLESLSLRETNVKSIPETIRHLPRLRNLYLTSCTVLRSIPRIPPSLHCLTANNCKSLERVFTPTPELLQQHLASYEKEYYIGGTILLEEIRPWRRLTSCRGARKSFEMMGALISEILPGSPERRIGCTRRPLLWEPKEEGIYADLVIHRSIEKYEDSEDSDEEMTKEGESYDEEESGMTEEMFDWSQAQREAYRRVRKEERAIPSITVNRLQNGIFNIQGVLKRRLDTMWAKSGGLDLIDLGNNFFAVRLFNEDDYCLSAQSTKRNLGPLFPHTFLKHTQPTLSNETVIEETPMDPNLNPKPSDPNVPYFSRSDLDEFMAEGTLAVLEWGNRDAPGFSGGLWLIWNNPNLSIQKISRNEQPLHISISDNLREWFLTIVYANPNEERKKELRNYIADLVPTINCSWMLCGDFNDISDISEKKGGRFT	1120

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu02g02289	1120	PRINTS	Disease resistance protein signature	667	683	-	-
	Adu02g02289	1120	PRINTS	Disease resistance protein signature	264	278	-	-
	Adu02g02289	1120	PRINTS	Disease resistance protein signature	170	184	-	-
	Adu02g02289	1120	PRINTS	Disease resistance protein signature	94	109	-	-
	Adu02g02289	1120	Gene3D	-	226	313	IPR042197	-
	Adu02g02289	1120	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	30	701	-	-
	Adu02g02289	1120	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	54	322	IPR027417	-
	Adu02g02289	1120	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	30	701	IPR044974	GO:0006952
	Adu02g02289	1120	SUPERFAMILY	DNase I-like	1018	1109	IPR036691	-
	Adu02g02289	1120	Gene3D	-	64	223	IPR027417	-
	Adu02g02289	1120	MobiDBLite	consensus disorder prediction	850	873	-	-
	Adu02g02289	1120	Pfam	NB-ARC domain	75	302	IPR002182	GO:0043531
	Adu02g02289	1120	SUPERFAMILY	L domain-like	368	752	-	-
	Adu02g02289	1120	Gene3D	-	4	63	IPR035897	-
	Adu02g02289	1120	MobiDBLite	consensus disorder prediction	848	873	-	-
	Adu02g02289	1120	Pfam	Leucine Rich Repeat	504	523	IPR011713	-
	Adu02g02289	1120	Gene3D	Ribonuclease Inhibitor	610	771	IPR032675	-
	Adu02g02289	1120	Gene3D	Ribonuclease Inhibitor	412	609	IPR032675	-
	Adu02g02289	1120	Gene3D	Endonuclease/exonuclease/phosphatase	995	1119	IPR036691	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu02g02289	Adu-Chr2	87814091	87821621	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu02g02289	12	743	WRKY Transcription Factor Family	AT4G12020	32.574	1.25e-93	328

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu02g02289	-		-	adu:107475670	1471.06