Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g02072 ATGGATGAACCCATGGAAAGTGGTGAGAGGCCAGTCTTCAAAGATATTAGACGCCACTTCTGTGAATACTGTGGCATTTGCAGGTCTAAAAAGATCTTAATTACCTCCCACATCAATTCACAACACAAGGACGAGTTGGAAAAAGCTAGAGCTGAAGGAAATAATGAAGCACATTGCGAAAAGCCCAACAACACTTGCCAACAATGTGGTGCTAGCTTCAAAAAACCTGCCTACTTGTTGCAGCACATGCAAAGCCATTCACTTGAGAGGCCGTATGTGTGTACGGTTGATGATTGTCAGGCAAGTTACAGAAGAAAGGACCATTTGACTCGTCACCTTCTACAGCATGAAGGGAAAACTTTTAAATGTCCAATGGAGAATTGCAACCTAATTTTCTCAATAAAAGGTAATATGGCAAGACATGTTAAAGAGATTCATGATGAAGGATCTACATCCACAAATGTAGAAAGTAAGCAGTTTGTATGCCCAGAAATTGGCTGTGGAAAGGTTTTCAAGTTTGCGTCAAAGCTTCGTAAACATGAAGATTCTCATGGCAACTTTTGTTCTGCAGTTAAGCTGCAGTCGGTAGATGTAGTGTGCTTGGAGCCTGGTTGCATGAAACATTTCACTAATAACCAGTGCCTTAAAGAACATATTGAATCCTGTCATCAATATGTAACCTGCGACACTTGTGGAAGTAGACAACTGAAAAAGAATATTAAAAGGCACCTTCGCACACATGAAGCTGACAAATCATTGGCAGAGTTTAAATGTGAATTTAAGGGCTGTAGCTGCAAATTCTCAAGTAAATCTAATCTCGTTGCACATAAGAAGGCCGTGCACTTTAAAGAAAAGCCCTTTGTATGTGGTTTTCCTGATTGTGGCCTGAGATTTGCTTACAAACATGTCAGAGATAAACACGAAAAAACTGGGAAACATGTTTTTACCCATGGGGATTTTGAAGAAGCTGATGAACAATTCAGGTCAAGGCCAAGGGGTGGGAGGAAGAGAGTGTGTCCTACAGTAGAAATGTTGGTCAGGAAAAGGGTTACACCACCTAGTCAATTGGAGAATTTGTTATTTATGCAGCAGTGA 1095 0.4064 MDEPMESGERPVFKDIRRHFCEYCGICRSKKILITSHINSQHKDELEKARAEGNNEAHCEKPNNTCQQCGASFKKPAYLLQHMQSHSLERPYVCTVDDCQASYRRKDHLTRHLLQHEGKTFKCPMENCNLIFSIKGNMARHVKEIHDEGSTSTNVESKQFVCPEIGCGKVFKFASKLRKHEDSHGNFCSAVKLQSVDVVCLEPGCMKHFTNNQCLKEHIESCHQYVTCDTCGSRQLKKNIKRHLRTHEADKSLAEFKCEFKGCSCKFSSKSNLVAHKKAVHFKEKPFVCGFPDCGLRFAYKHVRDKHEKTGKHVFTHGDFEEADEQFRSRPRGGRKRVCPTVEMLVRKRVTPPSQLENLLFMQQ 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g02072 364 ProSitePatterns Zinc finger C2H2 type domain signature. 123 146 IPR013087 -
Adu02g02072 364 SUPERFAMILY beta-beta-alpha zinc fingers 78 118 IPR036236 -
Adu02g02072 364 SMART c2h2final6 92 116 IPR013087 -
Adu02g02072 364 SMART c2h2final6 256 281 IPR013087 -
Adu02g02072 364 SMART c2h2final6 226 247 IPR013087 -
Adu02g02072 364 SMART c2h2final6 19 42 IPR013087 -
Adu02g02072 364 SMART c2h2final6 64 86 IPR013087 -
Adu02g02072 364 SMART c2h2final6 198 223 IPR013087 -
Adu02g02072 364 SMART c2h2final6 160 184 IPR013087 -
Adu02g02072 364 SMART c2h2final6 121 146 IPR013087 -
Adu02g02072 364 SMART c2h2final6 287 313 IPR013087 -
Adu02g02072 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 121 IPR013087 -
Adu02g02072 364 Pfam Zinc finger, C2H2 type 160 184 IPR013087 -
Adu02g02072 364 Pfam Zinc finger, C2H2 type 256 281 IPR013087 -
Adu02g02072 364 Pfam Zinc finger, C2H2 type 92 116 IPR013087 -
Adu02g02072 364 Pfam Zinc finger, C2H2 type 65 86 IPR013087 -
Adu02g02072 364 Gene3D Classic Zinc Finger 158 185 - -
Adu02g02072 364 PANTHER - 9 355 - -
Adu02g02072 364 ProSitePatterns Zinc finger C2H2 type domain signature. 258 281 IPR013087 -
Adu02g02072 364 ProSitePatterns Zinc finger C2H2 type domain signature. 162 184 IPR013087 -
Adu02g02072 364 ProSitePatterns Zinc finger C2H2 type domain signature. 94 116 IPR013087 -
Adu02g02072 364 Gene3D Classic Zinc Finger 284 310 - -
Adu02g02072 364 SUPERFAMILY beta-beta-alpha zinc fingers 102 165 IPR036236 -
Adu02g02072 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 151 IPR013087 -
Adu02g02072 364 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Adu02g02072 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 184 IPR013087 -
Adu02g02072 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Adu02g02072 364 Gene3D Classic Zinc Finger 10 91 - -
Adu02g02072 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 286 IPR013087 -
Adu02g02072 364 Gene3D Classic Zinc Finger 92 116 - -
Adu02g02072 364 Gene3D Classic Zinc Finger 224 283 - -
Adu02g02072 364 ProSitePatterns Zinc finger C2H2 type domain signature. 289 313 IPR013087 -
Adu02g02072 364 ProSitePatterns Zinc finger C2H2 type domain signature. 200 223 IPR013087 -
Adu02g02072 364 SUPERFAMILY beta-beta-alpha zinc fingers 18 92 IPR036236 -
Adu02g02072 364 PANTHER ZINC FINGER PROTEIN 9 355 - -
Adu02g02072 364 SUPERFAMILY beta-beta-alpha zinc fingers 237 291 IPR036236 -
Adu02g02072 364 Gene3D Classic Zinc Finger 117 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g02072 Adu-Chr2 83768628 83770764 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g02072 88 316 C2H2 Transcription Factor Family AT1G72050 50.709 1.93e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu02g02072 zf-C2H2 0.012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g02072 K09191 - gmx:100801812 553.132