Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Adu02g02029 | ATGGAGGAGGGATGGGTGCCCAAAAAGCTTGATGTGTACATAGATGTTCTTGATATCATAGATATTAATCATATGCGTAGCAAAGGTAATCACCCAGGGGAAGAACTGTTACCAGATGCGGAACCCATTGACGAGGATTCAAACCAGCCTTCCGCCAATGAAGACATTGTGGCACAGCTGGTTTCCATGGGTTTTAACCAGCTTCATTGTCAGAAGGCAGCTATTAACACCTCAAATGCTGGAGTAGAGGAGGCAATGAATTGGTTACTATCTCACATGGATGATCCAGATATTGACAGTCCTATTTTAAAAGGCAACAGCTCTGACAACGTTGATCAATCAAAAGTGGACATACTCATTTCTTTTGGATTTGAAGATCATGTTGCTCGAAAGGCATTGAAGGCATCGGGTCAAGACATTGAGAAGGCAACAGAGTGGATATTCAGCAATCCCAATGCATCAGTTTCTAGTATGGATGCTAGTGCATCAAACACAACCTCTGCTTCAAATGATGTTGGCTTGTCAGATGGAGGAGGAAAATATCGACTTATAGGAATTGTTAGCCACATGGGAACCTCGACACATTGTGGTCACTATGTAGCTCACATTTTGAAAGAAGGTAGATGGGTTATTTTCAATGACGCCAAGGTTGCGGTTTCGGTCCCAAGGACATGGGCTATCTATATTTTTTCGAGAGGATTGATGGTTGAATTAGATACTGTTTTTTTGATCACATGTTTGAACATTGTGATGATGAACATTTCATCTGTAAAGAGGATAGAATGGCACAAACCAGCTACCTGCACTACATACCTTTCTTGGTGGCATGCCCCCATCACTCAACAGCCACCACACCTCACCGTCAACCCTAATTTCACTTCCAAGTTCCAATCTTCATCCAACTCCGACGAAGGTCACCGTCCCTCCCAGTCTACCGCAATCGACGCCGCATCAGAGTTGCGTCACCGGGCAGAAAGACCTCCAACGGGCGGAAGGAAGTCACCGTCGCTGATTGAAGCTGCTGCAGCGCCGTTGTCGTCTGGTCGTCTGAACTCCGAAGCTTCCGTGGTCGGCGTCGTCTGCTCGTCGGAAGCTGCTCTGTCAACGCCGTCGAGCGTCTGGACGCCTTCTCTGCTCTCTGCGGCGAACTTGACCGCAACATCATCCTCACTTGGGCTGAAACTACAACCATATTCATAG | 1200 | 0.4667 | MEEGWVPKKLDVYIDVLDIIDINHMRSKGNHPGEELLPDAEPIDEDSNQPSANEDIVAQLVSMGFNQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDIDSPILKGNSSDNVDQSKVDILISFGFEDHVARKALKASGQDIEKATEWIFSNPNASVSSMDASASNTTSASNDVGLSDGGGKYRLIGIVSHMGTSTHCGHYVAHILKEGRWVIFNDAKVAVSVPRTWAIYIFSRGLMVELDTVFLITCLNIVMMNISSVKRIEWHKPATCTTYLSWWHAPITQQPPHLTVNPNFTSKFQSSSNSDEGHRPSQSTAIDAASELRHRAERPPTGGRKSPSLIEAAAAPLSSGRLNSEASVVGVVCSSEAALSTPSSVWTPSLLSAANLTATSSSLGLKLQPYS | 399 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Adu02g02029 | 399 | SUPERFAMILY | UBA-like | 106 | 152 | IPR009060 | GO:0005515 | |
| Adu02g02029 | 399 | MobiDBLite | consensus disorder prediction | 28 | 49 | - | - | |
| Adu02g02029 | 399 | Gene3D | - | 87 | 156 | - | - | |
| Adu02g02029 | 399 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 51 | 92 | IPR015940 | - | |
| Adu02g02029 | 399 | ProSitePatterns | Ubiquitin specific protease (USP) domain signature 2. | 181 | 199 | IPR018200 | GO:0004843|GO:0006511 | |
| Adu02g02029 | 399 | SMART | uba_6 | 112 | 149 | IPR015940 | - | |
| Adu02g02029 | 399 | SMART | uba_6 | 53 | 91 | IPR015940 | - | |
| Adu02g02029 | 399 | Gene3D | - | 49 | 86 | - | - | |
| Adu02g02029 | 399 | Pfam | Ubiquitin carboxyl-terminal hydrolase | 6 | 220 | IPR001394 | GO:0004843|GO:0016579 | |
| Adu02g02029 | 399 | Pfam | UBA/TS-N domain | 53 | 89 | IPR015940 | - | |
| Adu02g02029 | 399 | Pfam | UBA/TS-N domain | 112 | 147 | IPR015940 | - | |
| Adu02g02029 | 399 | SUPERFAMILY | Cysteine proteinases | 3 | 219 | IPR038765 | - | |
| Adu02g02029 | 399 | ProSiteProfiles | Ubiquitin specific protease (USP) domain profile. | 1 | 234 | IPR028889 | - | |
| Adu02g02029 | 399 | PANTHER | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE | 27 | 220 | - | - | |
| Adu02g02029 | 399 | MobiDBLite | consensus disorder prediction | 290 | 312 | - | - | |
| Adu02g02029 | 399 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 110 | 150 | IPR015940 | - | |
| Adu02g02029 | 399 | PANTHER | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 | 27 | 220 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Adu02g02029 | Adu-Chr2 | 83187708 | 83193762 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Adu02g02029 | 50 | 108 | C2H2 Transcription Factor Family | AT1G04850 | 35.000 | 7.58e-06 | 45.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Adu02g02029 | K11836 | - | gmx:100805602 | 332.413 |