Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g01959 ATGGAAATGGGTTCGAGCCCCCGCACCGTTGAAGAAATCTTCAAGGATTACTCTTCTCGCAGAACCGCCATCGTTCGCGCTTTAACTCAAGATGTTGATGAATTTTATGGGCTCTGCGATCCAGAAAAGGAGAACTTGTGCCTTTACGGACATCCAAATGAGTCCTGGGAAGTGACCCTGCCAGCTGAGGAAGTTCCACCAGAGCTTCCAGAGCCGGCTCTGGGAATCAATTTTGCTAGAGATGGCATGAACCGCAGGGATTGGCTTTCTCTAGTTGCTGTGCACAGTGATTCATGGTTGCTCTCAGTTGCCTTTTATCTTGGAGCCCGACTTAACCGCAATGAGAGGAAGCGTTTGTTTAGCTTGATCAATGATCTTCCAACTGTTTTTGAAGTTGTAACTGAAAGGAAACCAGTAAAGGACAAGCCAGCTGCAGACAGTGGAAGCAAATCGCGGGGCAGCACAAAGAGATCAAGTGACGGGCAAGTCAAAAGCAACCCGAAGTTCGATGAGGGTTATGAGGAGGAAGACGATGAGCACAGCGAAACTCTTTGTGGGAGCTGCGGCGGAAACTACAACGCGGACGAATTTTGGATTGGGTGCGACATATGCGAGAGGTGGTTCCATGGAAAATGTGTGAAGATCACACCGGCAAAGGCTGAGAGCATAAAGCAATACAAATGCCCATCATGCATGAGAAGGGGCAGGCCTTGA 714 0.4902 MEMGSSPRTVEEIFKDYSSRRTAIVRALTQDVDEFYGLCDPEKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPVKDKPAADSGSKSRGSTKRSSDGQVKSNPKFDEGYEEEDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCMRRGRP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g01959 237 SUPERFAMILY FYVE/PHD zinc finger 173 235 IPR011011 -
Adu02g01959 237 ProSiteProfiles Zinc finger PHD-type profile. 182 234 IPR019787 -
Adu02g01959 237 CDD PHD_AL_plant 184 234 IPR044104 -
Adu02g01959 237 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Adu02g01959 237 ProSitePatterns Zinc finger PHD-type signature. 185 231 IPR019786 -
Adu02g01959 237 PANTHER CPG BINDING PROTEIN 3 233 IPR045104 GO:0006355|GO:0042393
Adu02g01959 237 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 233 - -
Adu02g01959 237 MobiDBLite consensus disorder prediction 138 173 - -
Adu02g01959 237 MobiDBLite consensus disorder prediction 148 162 - -
Adu02g01959 237 Pfam PHD-finger 185 233 IPR019787 -
Adu02g01959 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 232 IPR013083 -
Adu02g01959 237 SMART PHD_3 184 232 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g01959 Adu-Chr2 81547881 81551892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g01959 5 236 Alfin-like Transcription Factor Family AT5G05610 78.298 3.49e-118 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Adu02g01959 Alfin 3.5e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g01959 - - gmx:100793126 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g01843 04 92235880 92240193 Adu02g01959 02 81547881 81551892 PCT