Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g01954 ATGTTCTACTCTCTACTCAGTATTATGGCTGTTATAACCACAACAAGGAGGAGTGAACGTTTCCGGCGAACAACACCACCGACATGTAAGTATTGGCTAGCTGGGAGATGCAACCGAAATCCTTGTAGATTTTCGCATAGCTCACCAACATTGCCATCGAATGCATACTATAATGGCAATACCACATATAAGCATTCAAAGCAACCAACAAATTGCGCATCGAAGACCCTCGAGAAGCCAGCAAATCGTGCACCAATGGCTGTTGTGTCTGTTGAGAAGCCAACCAAGTGTGAACCAATGGCTATGTCTGATGAGAAGATTACAGTGTGTGGACTAGAGGCTGTGTCCGTTGAGGAGCCAACCAAGTGTGTACAAAAGGCTGTATTAATTGAAAAGACTGCAGATGTGGAAGATGTGGACACCGTTATTGCTGAGGCTCCTGTGGAGAAATCACGAAGTATTTGTAAATATTGGATGACTGACACTTGTGTGCATGGTGACCTGTGCCAGAATTTGCATTCATGGTTTTATGGTGATGGGTTTTCTACACTTGCAAGGCTTCATGAACACAAGAAGGCTGTAACCGGGATTGCATTGCCGGCTGGTTCGGACAAACTTTATTCTGGCAGCACTGATGGCACAGTTCGGGTGTGGGACTGCAACACTGGCCGCTGTCTTGGTGTGATAAACCTTAATTCTGAAGTAACCTCGTTGGTATCTGAGGGCTCATGGATATTTGCCGGTGTGAAGAATGCTGTGAAGGCATGGAATATTCAAACCGGTGCAGATTTTACTCTTGATGGACCTATGGGGCAAGTCCTGTCCTTGAATGTTGGCAATGATATCCTCCTTGCTGGAGCAGAGGATGGTGTTATTTATGCTTGGAGAGTCAGCTCTGATCCCAAAGCTGAGTCTCCTTTCGAACTGGTTGCAACACTGAGTGGTCATACTAAACCGGTGGTTTGTCTTGCTATTGGATGCTACAAGATGCCTTATTCTGGGTCCATGGACCATAGCATTAAGGTTTGGGACCTTGATACATTACAGTGCACAATGACACTTAATGGACATTCTGACGTAGTCACATCACTTATTTGTTGGGACCATTACTTGTTATCGAGTTCTTCTGATTGCACGGTCAATGTTTGGGTGTGCACTGAGGAGGGAATTCTGAAGGTGGCATACACTCACACTGAAAAAAATGCTGTTCTTGGACTGTATGGGATGACTGATGCAGAGGCGAAACCAATATTGTTCTGCTCGTGCAAAGGCAATTCAGTTCGTATGTATGAATTGCCGACGTTTTTAGAGAGAGGTCGATTGTTTACAAGACAAGAAATTCGATCCTTTGAGATAGGCCCTAACGGACTCTTCTTTACTGGAGATGGGACTGGTTTGTTGAATGTGTGGAAATGGTTGGAAGAGCCTAAGGTGCCATGCTCCTGA 1446 0.4509 MFYSLLSIMAVITTTRRSERFRRTTPPTCKYWLAGRCNRNPCRFSHSSPTLPSNAYYNGNTTYKHSKQPTNCASKTLEKPANRAPMAVVSVEKPTKCEPMAMSDEKITVCGLEAVSVEEPTKCVQKAVLIEKTADVEDVDTVIAEAPVEKSRSICKYWMTDTCVHGDLCQNLHSWFYGDGFSTLARLHEHKKAVTGIALPAGSDKLYSGSTDGTVRVWDCNTGRCLGVINLNSEVTSLVSEGSWIFAGVKNAVKAWNIQTGADFTLDGPMGQVLSLNVGNDILLAGAEDGVIYAWRVSSDPKAESPFELVATLSGHTKPVVCLAIGCYKMPYSGSMDHSIKVWDLDTLQCTMTLNGHSDVVTSLICWDHYLLSSSSDCTVNVWVCTEEGILKVAYTHTEKNAVLGLYGMTDAEAKPILFCSCKGNSVRMYELPTFLERGRLFTRQEIRSFEIGPNGLFFTGDGTGLLNVWKWLEEPKVPCS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g01954 481 Gene3D - 177 327 IPR015943 GO:0005515
Adu02g01954 481 SUPERFAMILY WD40 repeat-like 164 471 IPR036322 GO:0005515
Adu02g01954 481 Pfam WD domain, G-beta repeat 308 344 IPR001680 GO:0005515
Adu02g01954 481 Pfam WD domain, G-beta repeat 184 219 IPR001680 GO:0005515
Adu02g01954 481 Pfam WD domain, G-beta repeat 349 383 IPR001680 GO:0005515
Adu02g01954 481 PANTHER - 21 478 IPR044715 -
Adu02g01954 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Adu02g01954 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 354 383 IPR001680 GO:0005515
Adu02g01954 481 SMART WD40_4 306 344 IPR001680 GO:0005515
Adu02g01954 481 SMART WD40_4 259 296 IPR001680 GO:0005515
Adu02g01954 481 SMART WD40_4 434 471 IPR001680 GO:0005515
Adu02g01954 481 SMART WD40_4 347 384 IPR001680 GO:0005515
Adu02g01954 481 SMART WD40_4 180 219 IPR001680 GO:0005515
Adu02g01954 481 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Adu02g01954 481 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Adu02g01954 481 PRINTS G protein beta WD-40 repeat signature 371 385 IPR020472 -
Adu02g01954 481 Gene3D - 328 480 IPR015943 GO:0005515
Adu02g01954 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 353 IPR001680 GO:0005515
Adu02g01954 481 ProSiteProfiles Zinc finger C3H1-type profile. 149 176 IPR000571 GO:0046872
Adu02g01954 481 ProSiteProfiles Zinc finger C3H1-type profile. 23 49 IPR000571 GO:0046872
Adu02g01954 481 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 21 478 - -
Adu02g01954 481 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 219 - -
Adu02g01954 481 SMART c3hfinal6 23 48 IPR000571 GO:0046872
Adu02g01954 481 SMART c3hfinal6 150 175 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g01954 Adu-Chr2 81516488 81519562 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g01954 190 403 Eukaryotic Initiation Factors Gene Family AT2G46290 23.707 1.37e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu02g01954 WD40 0.00028 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g01954 - - ahf:112726849 768.459