LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu02g01940	ATGCGATTTGCTCAGTTACAGATGGCTCATGACTTTTATGCGACCTATGCAAAGAAAGCTCGATTTGCAACTAAGATAAGGACGACAACATTTGATAAGATCACAAAGGCTCCCATTAACCAAGCTATACACTGTAATCGCGACGTGATCCGCGAGTCTCGTGTTAAAGCACCAACGCAGAAGAATACGATTTCAGCTACTGGGTGCAAGGCAAGGATATATGTAAAGTTTGATAAAGACGTGCAAGACTGGGTTTTGCTCaagGGTTCATTGGTCTGCGTGACGATGGAAGAGGAGAAACTAGTCAACGATACTATTCTATGCGTTTCGTACGATGTTCACTTTGACCATTCCACACAGGAGCTTCGTTGTGAGTGCAATCTTTTTGAGAGTTCAGGTGTGTTGTGCTGTCACTGCCTTGAAGTTTTCCATTCATATAAAGTGTACAAAGTACCTTCATGTTATGTTCTCCCTcgatggagcaagaagataaagcgcaaacatacgtatgtcaaaagtagccatgaTATCAGTCGGTCGGATGAGAGTCATGTTGCATTCAAGGGACTGTGTGCACACTTCTATAGTGTTGCTCAAGAGTTCGTCGGTGATGATGAAGAAACAACATTGCCGCATGTTGCTTTGGAAGAAACAATGGCCACGTTGGCTGCGCACCATGCCAAAAAGAGGTCCGAGAGCGTGTCAAAGACGCAGACGAACATTGGCTCATAG	732	0.4112	MRFAQLQMAHDFYATYAKKARFATKIRTTTFDKITKAPINQAIHCNRDVIRESRVKAPTQKNTISATGCKARIYVKFDKDVQDWVLLKGSLVCVTMEEEKLVNDTILCVSYDVHFDHSTQELRCECNLFESSGVLCCHCLEVFHSYKVYKVPSCYVLPRWSKKIKRKHTYVKSSHDISRSDESHVAFKGLCAHFYSVAQEFVGDDEETTLPHVALEETMATLAAHHAKKRSESVSKTQTNIGS	243

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu02g01940	243	Pfam	FAR1 DNA-binding domain	11	86	IPR004330	-
	Adu02g01940	243	PANTHER	OS03G0843700 PROTEIN	1	80	-	-
	Adu02g01940	243	PANTHER	OS03G0843700 PROTEIN	105	197	-	-
	Adu02g01940	243	ProSiteProfiles	Zinc finger SWIM-type profile.	111	147	IPR007527	GO:0008270
	Adu02g01940	243	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	1	80	IPR031052	GO:0006355
	Adu02g01940	243	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	105	197	IPR031052	GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu02g01940	Adu-Chr2	81152702	81154925	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Adu02g01940		FAR1	1.2e-08	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu02g01940	-		-	aip:107615899	290.041