Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g01898 ATGTATGCAACTATTGGCTATAGCTTATTAGAAGAAGAAGAAGAAATGAACAGGGGAATTGAAGTTCTGTCTCCAGCTTCTTACCTTCACAACTCAAATTGGTTGTTCCAAGAGAGTGCAGGAACCAAATGGACACCACAAGAGAACAAGCAATTTGAGAACGCTTTGGCGCTCTTCGACAAGGAGACGCCGGACCGGTGGCTGAAGGTGGCGGCTATGATCCCGGGGAAGACGGTTGGTGATGTGATCAAACAGTATAGGGAGTTAGTTGAAGATGTGAATGTAATTGAATCTGGGTTCATACCAATTCCAGGGGGAACTACTGATGGTTCTTTCACATTGGAGTGGGTTGATAATCATGAATTTGATGGGTTTAAGCAATTCTATGGTGTTGGTTGCAAAAGGGGTTCTTCCACTAGGCCTTCTGAACAAGAAAGGAAGAAAGGTGTACCATGGACTGAAGAAGAGCACAGGCTATTTTTGATGGGTTTGAAGAAGTATGGTAAAGGTGATTGGAGAAATATATCTCGAAATTTTGTTACAACAAGGACGCCGACGCAAGTTGCAAGTCATGCTCAGAAATACTTTATCCGGCAACTTAACGGCGGCAAGGATAAGCGGAGATCCAGTATCCATGATATCACAATGGTTAATCTCCCTGAAACAAAGTCGCCTTCGTCGGAAAGTAACAAACCTCCCTCTCCAGATGCAAATTTGAATCAGAGTCAGAAGCTTTTGTCAAGCATGGTTAAACAGGAATATGACTGGAAATCACCACCATATGAAGGTGTGCCTTTGGTGTTTGATTCAACAAATGGAAATTCGTTCATGACACCTTTGTGTGGAGCTTCTTCATACGGATCTAAACCTCAGGAGCAGTATTTACTCAGAGGAACTTTCCATGGATTTCAATTTGGACCTTATGATACTTTTATGCAAATGCAACCAATGCAACCTCAGTGA 963 0.4258 MYATIGYSLLEEEEEMNRGIEVLSPASYLHNSNWLFQESAGTKWTPQENKQFENALALFDKETPDRWLKVAAMIPGKTVGDVIKQYRELVEDVNVIESGFIPIPGGTTDGSFTLEWVDNHEFDGFKQFYGVGCKRGSSTRPSEQERKKGVPWTEEEHRLFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLNGGKDKRRSSIHDITMVNLPETKSPSSESNKPPSPDANLNQSQKLLSSMVKQEYDWKSPPYEGVPLVFDSTNGNSFMTPLCGASSYGSKPQEQYLLRGTFHGFQFGPYDTFMQMQPMQPQ 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g01898 320 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 147 199 IPR006447 GO:0003677
Adu02g01898 320 MobiDBLite consensus disorder prediction 203 240 - -
Adu02g01898 320 SUPERFAMILY Homeodomain-like 145 199 IPR009057 -
Adu02g01898 320 ProSiteProfiles SANT domain profile. 39 94 IPR017884 -
Adu02g01898 320 ProSiteProfiles SANT domain profile. 152 200 IPR017884 -
Adu02g01898 320 CDD SANT 43 90 IPR001005 -
Adu02g01898 320 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 16 244 IPR043363 -
Adu02g01898 320 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Adu02g01898 320 CDD SANT 151 196 IPR001005 -
Adu02g01898 320 Gene3D - 36 103 - -
Adu02g01898 320 PANTHER TRANSCRIPTION FACTOR DIVARICATA 16 244 - -
Adu02g01898 320 Pfam Myb-like DNA-binding domain 151 196 IPR001005 -
Adu02g01898 320 Pfam Myb-like DNA-binding domain 43 89 IPR001005 -
Adu02g01898 320 ProSiteProfiles Myb-like domain profile. 144 196 IPR001005 -
Adu02g01898 320 Gene3D - 150 200 - -
Adu02g01898 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 200 IPR017930 -
Adu02g01898 320 SMART sant 40 92 IPR001005 -
Adu02g01898 320 SMART sant 148 198 IPR001005 -
Adu02g01898 320 MobiDBLite consensus disorder prediction 215 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g01898 Adu-Chr2 80096190 80099317 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu02g01898 Myb_DNA-binding 2.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g01898 - - gmx:778077 467.618