Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g01888 ATGGATAATCTTGATCCTAACCTCATTTATGACGTCTTCTTGAGCTCCGAAATCGGACCTGATTCCAACCAATCATACACTTCATGTCTCTGCTCCTGTCTACAAAAAGCTGGAATCTCTGTCTTCCGGGACGACGATGCGCTTCCCAGGAACGACGACAACCACCACATCTCCCCCTCACAACTTCAGGCGATACAAAATTCAAGAATTTCCGTGGTTGTTCTCACAGAAGGCTACGCTGGTTCAGAAAGGTGTCTGCAAGTTCTGGAGCAAATTCTTGAATGTCACAGAATCGCAGGCCAGTTTGTTCTGCCGGTCTTCTTGGGTTTATATCTAGATGCCGTACGGTTCCAAATCGGTGCGTTTGGAAGAGCTTTTGAAGATCTCACAAAGAGAATCTCAGACAAAGATCAGGTAGAATGTTGGAAGATTGCTTTCGCAAGAATTTGTAGAATCCGACCCAACCACTGGGCTCGCACGAGCTACAGCAACAATTCACATGTTGAAGTTGACTTTAAGGAGACCTGGAGTGATAATGATAAAGATATCAAGGAACATGTAGAACTTGTTAGAGGCATGCTAAAAAGGACTGACTTGTTCATTGCTGAGTATCCAATGGGAGCATATCGTGCGTATCTGGTTCCACTGTTACTCGAACCCAAACCCACAGGTGTTGTACTACTAGGGATATGGGGGATGGTAGGAATTGGAAAAACAACATTAGCCAAATCCATTTATAATCAAATTGGTGATAATTTTGAGGGTAAAAGCTTCCTACCAAATATTAAGCATGTATGGGAACAACAAACAAGGCGTGCTTATTTACAGGAACGACTTCTCATGGATATCTGCATCCCATCAGAACGACAAGTAAAGATAGATAGCATTGAAAATGGGAAGAAGAAACTAAAGGaaattctttctcataaaaagctacttgttgtacttgatgatgtgaataaattggagcagttaaatgctttgtgtggaagtcgtggatggtttggtcccgggagtatgataataatcacaacaagagatagaggactactTCGGAATGTCGACATGATGGTTGGAGTTGATCATGTGCATGAAATGAAAGAAATGGATGAGAACGAGTCATTTGAGATTTTTAATCGGTGTGCATTCAAATCACATGGGTTTGATTATCGCAAGGACAAAAGAGATATATCAGCATTTAATACACAAGCTGCAGTTGCTTATGCTGGGAGATTACCGCTGGCTTTGGAAGTCCTTGGTTCCAAAATTTTCACAAGCTTCAATTTGGATAGTGCATTAGACAGATGCACAGAATCTCTCCATCCCGTACTAAAAAAGGTGTTCAAAAGGCATATTGATGATGATTTGATCGGTACAGAGAAAGAGATATTCCTTGATGCAGCGTGTTTCTTAAATGGGATGAATCGAGACGAGGTAGTTGAGGCATTAAATGCCTTTGGAGACTTTGCCAAAATTGGAATAAGAAACCTTGAAGACAAATGCTTCGTAGCCTTTGATCACATGAACAACCTTGGAATGCATGTCTTACTACGTGACTTTGGGAGAGAAATCCTTCGAGAACAAATTCGAGTGGAGCCCGCGCAAAAGTTACAGTTTTCAACCGCGGCCATTATCGCCGTGACTATAGTCAACGATCATGGTTTTTTAAGCAAAGATCACGGTCTTTTTCTTACAAAATAA 1701 0.3833 MDNLDPNLIYDVFLSSEIGPDSNQSYTSCLCSCLQKAGISVFRDDDALPRNDDNHHISPSQLQAIQNSRISVVVLTEGYAGSERCLQVLEQILECHRIAGQFVLPVFLGLYLDAVRFQIGAFGRAFEDLTKRISDKDQVECWKIAFARICRIRPNHWARTSYSNNSHVEVDFKETWSDNDKDIKEHVELVRGMLKRTDLFIAEYPMGAYRAYLVPLLLEPKPTGVVLLGIWGMVGIGKTTLAKSIYNQIGDNFEGKSFLPNIKHVWEQQTRRAYLQERLLMDICIPSERQVKIDSIENGKKKLKEILSHKKLLVVLDDVNKLEQLNALCGSRGWFGPGSMIIITTRDRGLLRNVDMMVGVDHVHEMKEMDENESFEIFNRCAFKSHGFDYRKDKRDISAFNTQAAVAYAGRLPLALEVLGSKIFTSFNLDSALDRCTESLHPVLKKVFKRHIDDDLIGTEKEIFLDAACFLNGMNRDEVVEALNAFGDFAKIGIRNLEDKCFVAFDHMNNLGMHVLLRDFGREILREQIRVEPAQKLQFSTAAIIAVTIVNDHGFLSKDHGLFLTK 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g01888 566 Pfam TIR domain 10 160 IPR000157 GO:0007165
Adu02g01888 566 PRINTS Disease resistance protein signature 227 242 - -
Adu02g01888 566 PRINTS Disease resistance protein signature 306 320 - -
Adu02g01888 566 PRINTS Disease resistance protein signature 409 423 - -
Adu02g01888 566 Pfam NB-ARC domain 217 441 IPR002182 GO:0043531
Adu02g01888 566 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 534 IPR044974 GO:0006952
Adu02g01888 566 Gene3D - 5 188 IPR035897 -
Adu02g01888 566 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 131 IPR035897 -
Adu02g01888 566 Gene3D - 209 359 IPR027417 -
Adu02g01888 566 SMART till_3 9 152 IPR000157 GO:0007165
Adu02g01888 566 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 20 534 - -
Adu02g01888 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 448 IPR027417 -
Adu02g01888 566 ProSiteProfiles TIR domain profile. 8 194 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g01888 Adu-Chr2 79896689 79900213 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g01888 206 530 WRKY Transcription Factor Family AT5G45050 30.030 7.96e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g01888 - - ahf:112749643 1058.13