Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g01831 ATGTCAAGTATTCAAATGTCTCATGTGGATTTGGAACAAGGAAGAATCCTCCACCACCACCACCACCACCATAGCTCAGTGACTGGGAGTGACATTAGTCTATGCTTCTCTGATGCTGATGATGGAGGCTCATGCTACTCCCATTTCTACTCCACAAATGGTGGTGGATCCTACGATGAAGATTGCTGCTCCTATGGTGGAGCCTCAAATGTTGCAGATGGTGATGATGATGATTGTTCAGTTGAGATTGAAATTGAAAGTGGGGTACCTGAGATTAAGGTGCATTTGGCCACAAACAATAAAGTTGAGAGTAGGGATTGCAGGATTTGCCACCTTGGTTTGGAAGGTGATGATGGGAATAATGAATCTGGTGTTCCAATTGAATTGGGTTGTTCTTGTAAAGATGATCTTGCTGCTGCTCACAAGAATTGTGCAGAGGCTTGGTTCAAGATTAAGGGTAATAGGACCTGTGAAATTTGTCATACAATTGCACGGAATGTGTATTCAGCAAGTGAGGAGACTCTTTAG 528 0.4318 MSSIQMSHVDLEQGRILHHHHHHHSSVTGSDISLCFSDADDGGSCYSHFYSTNGGGSYDEDCCSYGGASNVADGDDDDCSVEIEIESGVPEIKVHLATNNKVESRDCRICHLGLEGDDGNNESGVPIELGCSCKDDLAAAHKNCAEAWFKIKGNRTCEICHTIARNVYSASEETL 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g01831 175 SMART ringv_2 106 161 IPR011016 GO:0008270
Adu02g01831 175 CDD RING_CH-C4HC3_MARCH 107 161 - -
Adu02g01831 175 Pfam RING-variant domain 107 160 IPR011016 GO:0008270
Adu02g01831 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 171 IPR013083 -
Adu02g01831 175 ProSiteProfiles Zinc finger RING-CH-type profile. 99 167 IPR011016 GO:0008270
Adu02g01831 175 PANTHER OS01G0850200 PROTEIN 5 172 - -
Adu02g01831 175 PANTHER ZINC FINGER, RING-CH-TYPE 5 172 - -
Adu02g01831 175 SUPERFAMILY RING/U-box 101 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g01831 Adu-Chr2 78485887 78491205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g01831 9 172 C3H Transcription Factor Family AT2G37950 45.238 7.08e-37 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g01831 - - gmx:100813946 232.261