Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g01675 ATGCAAGCAGAGCAACTCAGAATAGATGGAAACGCTTACTTCAAGAAAGATTGTTTCAGTGCCGCCGTTGATGCCTACACAGAGGCAATTACTTTGTGCCCTAATGTTCTTGTGTATTGGACGAACCATGCTTTCTGCCATCTTAAGCACTATAATTGGGAGAGAGTGGAAGAATATTGTCGGAGAGCAATTCAGCTTGACAATCATTCGGTTACGGTCTTTGTAATCTACTTTGTAATCACCAAATTTTATATAGTTGTTGAGGTTTAG 270 0.4 MQAEQLRIDGNAYFKKDCFSAAVDAYTEAITLCPNVLVYWTNHAFCHLKHYNWERVEEYCRRAIQLDNHSVTVFVIYFVITKFYIVVEV 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g01675 89 Gene3D Tetratricopeptide repeat domain 1 78 IPR011990 GO:0005515
Adu02g01675 89 SMART tpr_5 37 70 IPR019734 GO:0005515
Adu02g01675 89 SMART tpr_5 3 36 IPR019734 GO:0005515
Adu02g01675 89 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 2 76 IPR045200 GO:0000209|GO:0061630
Adu02g01675 89 ProSiteProfiles TPR repeat profile. 3 36 IPR019734 GO:0005515
Adu02g01675 89 SUPERFAMILY TPR-like 3 73 IPR011990 GO:0005515
Adu02g01675 89 PANTHER OS08G0113300 PROTEIN 2 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g01675 Adu-Chr2 71187120 71187616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g01675 3 71 U-box Gene Family AT3G07370 62.319 1.06e-25 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g01675 K09561 - gmx:100796519 116.316