Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g01617 ATGGAAGGTCGCCGGAGGATAACACTTTATGATCAAATAACCGCTGGCAAAACCACCTCCCTAGCAGATTTGATCCTTCACGACAGTGTCACCGCCGTCTCTGCCGCCGCCGCAGACACCACCGCCGCCACTGCCGATTCTGAAAGCTGCGAGTTGAGCCAAAGCCGAACCCTCGTAGATATCCTCCGCGAAGATAAACACAACAACATCACCACAGCGGACCGCAAATCTAGAAAATCCTTCAGTTTCATGGACAAGCTTAGATTCAAGCTCGCACTCAATTCAAGATCAAATTACAGTAATGAAAACAATTCCAGTAACAACGACAACAACAACAACAGCAGCAGCAGCAACAATCATATTGATACCAACCTGTCCGAGTTGCAAGCGCGCATCGATCCGGACGAGTTGACTCAGCAAGACGCCACGACTCACCGACAGCAAAACGTCGCCATTGCTACTGCCGCCGCCGCAGACACTGAAATCCCGGCGGAAGTCGCGGTGGTGGGACCGGTTGGCGTGTCGCTAATGGATTTGTTGGAGGAAACGGACATGGAAACGGGATTCGAAGTTTCGAGTTACAGAATGAGCAATGCTGATTTTGAAGATGTGATTGAATGTGTAGAAGAAAAGTGCGAAGAAGAAGGGGCGAGTATCGTGGAACGTAACTGCTGCGTGTGCATGGTGAGGCATAGAGGTGCGGCTTTTATACCCTGCGGGCACACGTTCTGCAGGCTGTGCTCCAGGGAGGTTTGGGTCAACAGAGGGAACTGCCCTCTCTGCAATAATTTCATTTTGGAAATTCTTGATATTTTCTGA 819 0.5018 MEGRRRITLYDQITAGKTTSLADLILHDSVTAVSAAAADTTAATADSESCELSQSRTLVDILREDKHNNITTADRKSRKSFSFMDKLRFKLALNSRSNYSNENNSSNNDNNNNSSSSNNHIDTNLSELQARIDPDELTQQDATTHRQQNVAIATAAAADTEIPAEVAVVGPVGVSLMDLLEETDMETGFEVSSYRMSNADFEDVIECVEEKCEEEGASIVERNCCVCMVRHRGAAFIPCGHTFCRLCSREVWVNRGNCPLCNNFILEILDIF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g01617 272 ProSiteProfiles Zinc finger RING-type profile. 224 262 IPR001841 -
Adu02g01617 272 PANTHER OS01G0917900 PROTEIN 2 134 - -
Adu02g01617 272 PANTHER OS01G0917900 PROTEIN 100 272 - -
Adu02g01617 272 CDD RING-HC 224 261 - -
Adu02g01617 272 SUPERFAMILY RING/U-box 223 268 - -
Adu02g01617 272 MobiDBLite consensus disorder prediction 97 121 - -
Adu02g01617 272 Pfam Zinc finger, C3HC4 type (RING finger) 221 265 - -
Adu02g01617 272 PANTHER OS01G0917900 PROTEIN 100 272 - -
Adu02g01617 272 PANTHER OS01G0917900 PROTEIN 2 134 - -
Adu02g01617 272 SMART ring_2 224 261 IPR001841 -
Adu02g01617 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 271 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g01617 Adu-Chr2 68684601 68685808 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g01617 1 272 C3H Transcription Factor Family AT3G25030 36.934 1.83e-37 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g01617 - - gmx:100802736 188.348