LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu02g01557	ATGATTGATGGAATTTTCATTATGGAATTCTCTGTAAGAGCTGCGGAACTAACTACTCTATTAGAAAGTAGAATTACCAACTTTTACACTAATTTTCAAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCACGCGTTTATGGATTGAAGGAGATTCAAGCTGGGGAAATGGTTGAATTTGCCAGCGGTGTGAAAGGAATAGCGTTGAATCTTGAGAATGAGAATGTCGGAATTGTTGTCTTTGGTAGTGATACCGCTATAAAAGAAGGAGATCTTGTCAAACGCACTGGATCCATTGTGGATGTTCCTGCGGGAAAGGCTATGCTAGGGCGTGTGGTCAACGCCTTGGGAGTCCCCATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCACCTGGGATTATTGAACGTAAATCTGTGCACGAGCCTATGCAAACAGGGTTAAAAGCGGTAGATAGCCTGGTTCCTATAGGCCGTGGTCAACGAGAACTGATAATCGGGGACCGACAAACTGGAAAAACAGCTATTGCTATCGATACCATATTAAACCAAAAGCAAATGAACTCAAGGGCCACCTCTGAGAGTGAGACATTGTATTGTGTCTATGTAGCGATTGGGCAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTATAGAATATTCCATTCTTGTAGCAGCCACCGCTTCGGATCCGGCACCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGATGATTTTAGTAAACAGGCCGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACCAGGCCGTGAGGCTTTCCCAGGCGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGCCGCTAAACGATCGGACCAAACAGGCAGACAAGGCAGCTGCTTGAAGACGTATAATGTGATCTCCATTACTGATGGACAAATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTCGGCTTATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTCTGCGGTAGTTTAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTTAA	1200	0.4517	MIDGIFIMEFSVRAAELTTLLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLKEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVNALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANAIEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDFSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGRQGSCLKTYNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSLKLELAQYREVAAF	399

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu02g01557	399	Gene3D	-	376	399	IPR038376	-
	Adu02g01557	399	Pfam	ATP synthase alpha/beta family, beta-barrel domain	34	101	IPR004100	GO:0046034\|GO:1902600
	Adu02g01557	399	CDD	ATP-synt_F1_alpha_N	36	101	-	-
	Adu02g01557	399	Gene3D	-	11	102	IPR023366	-
	Adu02g01557	399	PANTHER	ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL	13	399	-	-
	Adu02g01557	399	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	105	374	IPR027417	-
	Adu02g01557	399	SUPERFAMILY	C-terminal domain of alpha and beta subunits of F1 ATP synthase	377	399	-	-
	Adu02g01557	399	ProSitePatterns	ATP synthase alpha and beta subunits signature.	359	368	IPR020003	GO:0005524
	Adu02g01557	399	Pfam	ATP synthase alpha/beta chain, C terminal domain	375	399	IPR000793	GO:0015986
	Adu02g01557	399	SUPERFAMILY	N-terminal domain of alpha and beta subunits of F1 ATP synthase	19	103	IPR036121	GO:0046034\|GO:1902600
	Adu02g01557	399	TIGRFAM	atpA: ATP synthase F1, alpha subunit	12	399	IPR005294	GO:0015986\|GO:0045261\|GO:0046933
	Adu02g01557	399	CDD	F1_ATPase_alpha	103	371	IPR033732	GO:0032559
	Adu02g01557	399	PANTHER	ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL	13	399	-	-
	Adu02g01557	399	Pfam	ATP synthase alpha/beta family, nucleotide-binding domain	158	368	IPR000194	GO:0005524
	Adu02g01557	399	Gene3D	-	103	375	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu02g01557	Adu-Chr2	65641424	65642699	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu02g01557	69	374	Primary Pumps ATPases(2)	AT4G38510	26.364	2.46e-21	94.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu02g01557	K02132		-	gmx:15308608	720.694