Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g01556 ATGGCAGATCCTTACTCTAATTTTTTCAGAGGCTTCTTCCACCATAACAATAACCATGACCATTTCAATTATAATCCCACTCCTCCTCCGTCTTCCTCTCACCACCACCACCACCATCCTTATCTTCACAACTTCATCAAAACCACCAATTACAACAACAATAATAATAGCACCTTTTTCCACCATCACCACCACCGTCACCATCAAATTACAACTGCCACTTCTTCTTCTTCTTCTTCTTATTCTTATTATTCTTCACCCCCTTCCCCTCCTCTCAGAGAAGCTCTCCCACTTCTCAGTCTTAGTCCAGCAAACCAAGAACGCGACGAACATCACTATCATCATCACCATGATGATTATACTCATCAACAAGATCAACATCAAGAAACACAAGATCATAGTCTTTCCACCACCACCTGCACTGCCATGGATACTAGTTTTGTCCTCGTCCACGACAAAATGGAAGAGGACATCAGAATCTATGGCGGTCGCAACAAGCCCAAAGGCGAGGCGAAAGGGGAGGACGACAACAACGACGAAGAAGAAGACAACAACAATAGTGTGACGGTTGCACTTCACATAGGGTTACCAAACCCTAGTGCTGCTGAACTGGCAACAATTACCTCCATGGAATCTTCTTCTAACAATAATAACAATAGCAATTCATCATCAACGGAGAAAGAACAACATCATCATGAGGAAGAAGGAGAAGGGAGTGAAGAGTCGCAGTGTCATAAAGGGTTCTTGGGTACAAGACTCAACAAGGGACAGTACTGGATCCCAACCCCAACCCAGATTCTCATTGGTCCAACTCAATTTTCTTGCCCTGTTTGCTACAAAACTTTCAACAGATACAACAATATGCAAATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGTCCTGAATCTCTAAGAGGAACTCAACCAACAGGTATGCTTAGGCTTCCATGTTATTGCTGTGCACCAGGTTGTAGGAACAACATTGACCACCCAAGATCAAAGCCATTGAAGGATTTCAGAACCCTCCAAACTCATTACAAGAGGAAGCATGGGATCAAGCCCTTCATGTGCCGGAAATGCGGCAAGGCCTTCGCCGTCCGAGGCGATTGGCGGACGCATGAGAAGAATTGTGGCAAACTTTGGTATTGCATCTGTGGATCCGATTTTAAACACAAGAGGTCGCTTAAGGATCATATAAAGGCTTTTGGGAGTGGACACGCCGCGCTTGGGATCCACGGCGGATTATTTGAAGAGGAGGAGGAGCCGGCATCTGAAGTCGAACAAGATAATGATGAACTCAACCAGTAA 1314 0.4482 MADPYSNFFRGFFHHNNNHDHFNYNPTPPPSSSHHHHHHPYLHNFIKTTNYNNNNNSTFFHHHHHRHHQITTATSSSSSSYSYYSSPPSPPLREALPLLSLSPANQERDEHHYHHHHDDYTHQQDQHQETQDHSLSTTTCTAMDTSFVLVHDKMEEDIRIYGGRNKPKGEAKGEDDNNDEEEDNNNSVTVALHIGLPNPSAAELATITSMESSSNNNNNSNSSSTEKEQHHHEEEGEGSEESQCHKGFLGTRLNKGQYWIPTPTQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAALGIHGGLFEEEEEPASEVEQDNDELNQ 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g01556 437 MobiDBLite consensus disorder prediction 210 244 - -
Adu02g01556 437 ProSiteProfiles Zinc finger C2H2 type domain profile. 357 377 IPR013087 -
Adu02g01556 437 Gene3D Classic Zinc Finger 335 410 - -
Adu02g01556 437 SUPERFAMILY beta-beta-alpha zinc fingers 242 295 IPR036236 -
Adu02g01556 437 SUPERFAMILY beta-beta-alpha zinc fingers 338 377 IPR036236 -
Adu02g01556 437 MobiDBLite consensus disorder prediction 210 224 - -
Adu02g01556 437 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 55 434 - -
Adu02g01556 437 MobiDBLite consensus disorder prediction 71 87 - -
Adu02g01556 437 MobiDBLite consensus disorder prediction 109 136 - -
Adu02g01556 437 SMART c2h2final6 273 295 IPR013087 -
Adu02g01556 437 SMART c2h2final6 357 377 IPR013087 -
Adu02g01556 437 MobiDBLite consensus disorder prediction 160 174 - -
Adu02g01556 437 MobiDBLite consensus disorder prediction 160 184 - -
Adu02g01556 437 ProSitePatterns Zinc finger C2H2 type domain signature. 275 295 IPR013087 -
Adu02g01556 437 PANTHER ZINC FINGER PROTEIN WIP2 55 434 IPR043584 GO:0003700|GO:0010468
Adu02g01556 437 MobiDBLite consensus disorder prediction 109 129 - -
Adu02g01556 437 Gene3D Classic Zinc Finger 272 295 - -
Adu02g01556 437 MobiDBLite consensus disorder prediction 225 242 - -
Adu02g01556 437 MobiDBLite consensus disorder prediction 63 90 - -
Adu02g01556 437 ProSiteProfiles Zinc finger C2H2 type domain profile. 273 300 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g01556 Adu-Chr2 65075220 65079133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g01556 188 433 C2H2 Transcription Factor Family AT3G57670 75.486 7.92e-137 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu02g01556 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g01556 - - aip:107628393 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu02g01556 02 65075220 65079133 Adu02g01556 02 65075220 65079133 ECH
Adu02g01556 02 65075220 65079133 Adu08g01177 08 20758607 20760274 ECH
Adu06g00929 06 11381720 11383479 Adu02g01556 02 65075220 65079133 PCT