Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g01526 ATGCTCCTGCAGCATCAAAACATCCTGAATCTACAAAAACACCTTCTGGGCTTCAAATTGAGATATTTCATGACTTGTGCTTGCATTGACTATTGGGGAGTTGTCCTTCCACGCCTTTCTGTTTTGAAAGGCTTCTCCTTGGTTCCTCTTCATGGAAAGATGAAGCAGACTGTTAGGGAGAAAGCATTAGCCTCCTTTACATCCCTTTCAAATGGAGTTCTGCTATGTACAGATGTTGCAGCACGTGGACTTGACATACCAGGTGTAGATTGTATAGTGCAGTATGATCCTCCTGAAGATCCAAATGTTTTCATACACAGAGTTGGTCGAACTGCTCGGCTGGGTAAACAAGGTCAAGCAGTTGTCTTCTTATTGCCAAAGGAGGAGTCTTACGTAGAATTCCTACGTATAAGAAGAGTTCCTCTTCAAGAGAGAAAATGCTCTGATGATGCACCTGATGTTGTACCTCAGATTCGTTCTGCTGTGAAAAAAGATCGTGATGTTATGGAGAAAGGAGTCAGGGCATTTGTTTCCTACATCCGTGCATACAAGGAGCATCACTGTTCATATATTTTTAGGTGGAAAGAACTTGAAATTGGTAAATTGGCCATGGGACATGGCTTATTGCAACTTCCTCTAATGCCAGAGGTAAAACATCACTCACTTTCTACTGAGGGATTTGTACCAGTTGATGATATCAATTTGGAGGACATTAAATACAGAGATAAATCTCGTGAAAAACAAAGGAAGAAAAACCTGCAAGCAAAGAAAGAAGCGAAAGAGAAGGAGAAAGAGGCGAAACCAGAAAAGCCAACAAAACTCCCAGATTCGAGCAGTGGGAACTCGTGCATCAACGATCCGGGTGGCGGGCGTCAGCGAGATCCACCTCCAAACAGGGGTGATCTCAATCGCAGAGTGGACATTCCTTCGTTTGATGGCTCGGATGCGAGCGGATTGTTGGTTCGAATGGATCGTTATTTTCGCATATCAAGGATTCAGGTGGAAGAGAAACTCGAGTACGCGGTGCTTGCACTTCATGGGGAAGCTTTAACATGGTTTGAATGGTGGGAGTCTCAATCCACCTTCCCTTCATGGATTCGTTTTAAACAAGATTTGCTCAAACGATTTGAGCCCGGTGCAGATGCGAATCCTCTTGCGCCATTATTGCAGGTGAGACAGCATGGGTCGGTTATGGAGTATCGGAGAGACTTTGAGATAGCGGCTAGGGCACATAGACATTTGGGGGGAGATACCTTGTTGTGCATGTTCCATGAAGGACTCAAACCGTCGATCAAAGCAGAGATGAGAGTTGCCGAGTTTGAAGACCTCCAggcgctgatggatagggccaagctattcaaaagtggaaacactatctcgtgggacagcagttcacagtttttactgatcaacagtccttga 1422 0.4184 MLLQHQNILNLQKHLLGFKLRYFMTCACIDYWGVVLPRLSVLKGFSLVPLHGKMKQTVREKALASFTSLSNGVLLCTDVAARGLDIPGVDCIVQYDPPEDPNVFIHRVGRTARLGKQGQAVVFLLPKEESYVEFLRIRRVPLQERKCSDDAPDVVPQIRSAVKKDRDVMEKGVRAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGHGLLQLPLMPEVKHHSLSTEGFVPVDDINLEDIKYRDKSREKQRKKNLQAKKEAKEKEKEAKPEKPTKLPDSSSGNSCINDPGGGRQRDPPPNRGDLNRRVDIPSFDGSDASGLLVRMDRYFRISRIQVEEKLEYAVLALHGEALTWFEWWESQSTFPSWIRFKQDLLKRFEPGADANPLAPLLQVRQHGSVMEYRRDFEIAARAHRHLGGDTLLCMFHEGLKPSIKAEMRVAEFEDLQALMDRAKLFKSGNTISWDSSSQFLLINSP 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g01526 473 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 20 267 - -
Adu02g01526 473 Pfam Retrotransposon gag protein 340 428 IPR005162 -
Adu02g01526 473 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 3 162 IPR001650 -
Adu02g01526 473 CDD SF2_C_DEAD 22 124 - -
Adu02g01526 473 Pfam Helicase conserved C-terminal domain 43 115 IPR001650 -
Adu02g01526 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 135 IPR027417 -
Adu02g01526 473 SMART DUF4217_3 153 216 IPR025313 -
Adu02g01526 473 Coils Coil 243 265 - -
Adu02g01526 473 SMART helicmild6 30 115 IPR001650 -
Adu02g01526 473 MobiDBLite consensus disorder prediction 242 309 - -
Adu02g01526 473 MobiDBLite consensus disorder prediction 242 272 - -
Adu02g01526 473 PANTHER RNA HELICASE 20 267 - -
Adu02g01526 473 Gene3D - 20 220 IPR027417 -
Adu02g01526 473 Pfam Domain of unknown function (DUF4217) 156 213 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g01526 Adu-Chr2 62700902 62705105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g01526 44 124 Eukaryotic Initiation Factors Gene Family AT3G19760 38.272 2.72e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g01526 K14809 - gmx:100807011 445.277