Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g01447 ATGGACTTGGGAAACGAAACCAACATCTCTCAACCCTACACCCAAGAAGACGGCGACCCCAAGCACCTCGGCTTCATCTACGCCAACATCATCGGCCTCCGCTACTGCTCTGGCCCCGTCCGCGCCCGCCAGATGGTCGCCTTCCTCCGCGAACCTCTCCATCCCCACAGCCCCAACGCCATCAAAGTCCTCAACACCCGCTCCGTCCAGGTCGGTTACATCGATTGGACCGTCGCCGACGCACTTTCCCCTCTCATCGACTCCGAACTCATCACCGTCAAGGCCTTCGTCCCCAACCGCCGCTCCAAGACTGACCGCTCCCTCAGCTGCCAAATCCACATCTTCGCCCCTCTCCCTTCTTTCCCCACTGTCACTCAGCTCATCTCCGATCGACGCCTCCGCCTCATAACCCAAAACGACTTCTCCTTTAAGTTTTCGCTCTTTGCCCCTCCGGAGAGCGTTGTGAGGTTCCTCGGCTTCATCAACGCCAACATCATCGGCCTCGGCCATTGCTCCGGCGCTGTCCACGCCCGCGAGATGGTCGCCTTCCTCCGCGAACCTCTCCATCCCCACAGCCCCAACGCCATCAAAGTCCTCAACACCCGCTCCGTCCAGGTCGGTTACATCGAGTGGACCGTCGCCGACGCACTTTCCCCTCTCATCGACTGCGAACTCATCACCGTCGAGGCCATCGTCCCCAACCGCCGCTCCAAGACTGACCGCTCCCTCCTCTGCCAAATCCACATCTTCGCCCCTCTCCCTTCTTTCCCCACTGTCACTCAGCTCATCTCCGAACGCGGCCTCCACCTCATAACCCGAAACGACGCCTCCTTTAAGATATCGGTCGTTACTGTCAAAGAAACCCCCGCTGATTCGAGGTTCAAGAGTGTGGACGAGATTTTCAGGCGATTTGGCGAGAGATTGACGGCGAAAGAGCGTGTCTCTCACGCGCTGGAGCCTCCGGAGAGCGTTGTGAGGTCGAAGCTCATGGAGCACCAGAAGGAAGGGTTGTGGTGGCTACTCAACAGAGAGGAAAGCAAGGAGCTTCCGCCGTTTTGGGAGGAAAGAGAAGGGGGCGAGTTCGTCAACGTATTGACCAATTCCAGCACGTGCTTAAAGCCAGAGCCTTTGAGGGGAGGGATCCTGGCCGATGAAATGGGGCTCGGAAAGACTCTCACTTTGCTCTCTCTTATTGCCCTTGATAAGGATTCCGGTGAGAGGAAGGGAAAGAAGAGAAGAAAGATTGAAATTGGGGAGAGCAGTGCAACGCTTGTAGTGTGCCCTCCCCCTGTGTTTTCGACTTGGATTTTGCAATTGGAGGAACACATTGTGCCTGGTTCACTGAGGACTTACATGTATCATGGTGACAAGAGGGCTAAGAATGCTGAGGACCTCATGGATTATGATTTGGTGCTCACTACTTACTCTACACTCGCCGTGGAGGCGGATGACCCCCACTCGCCGGTGAAGAAGGTGGTCTGGAGGAGGATCATATTGGATGAGGCTCACGGTATCAAGAATTCATATGCCCAGCAGAGCAAGATGGTTATTAGTCTCAATGCCAAGAGGAGGTGGGCTGTCACCGGCACACCTATTCATAATGGCTCCGTGGACTTGTTTTCACTCGTGGCTTTCCTGCATTTTGAGCCCTTCTCCGAATATGGCTATTGGCGCAGCCTCGTGCGACGGCCTCTCAGTCAGGGCCTTCCGAGCGGCCTCTCACGCCTGCAGGTTTTGATGGCGGCAATTTCGTTAAGAAGAACAAAAGACAAAGGATTGTTAGGCCTGCCACCAAAAACTATTGAGACTCAATATGTTGAACTTAATTCAGAAGAACGTGAACTGTATGATCAGGTGAAAGAGCATGTGACGCGTTCCATGAATTTTACTTTTTTCATTGGAGTTAAGAGTTCTGCTTATGCGCTAAGTATGCTTTTTCATCTTTGCCAAATATGTACTGATTTAGCATTGGTCCCTAATGATCTCGCAACCACATTCTGTTCAACTAATATTGAAGAAGCTTCCAATAACCCGCAGTTGTTGCAAAAGTTAGTTGAGATGCTGCAAGACGGCGTAGATTATGAGTGCCCAATTTGCACTTCTCCTTCAGCAGACATCATTATCACCCGCTGTGCTCACATCTTCTGCCGAGTCTGTATTCTGACATGTCTACGATCCAGAAATTCCTGTTGTCCTCTTTGCCGTCAAGCCCTATCTGGATCTGACTTGTTCTCAGCCCCACTCGAGCCTTCTAAAGCTGAAAGTACCGCTTCATCCTCATCATGGGATAAAAAGTTATCTTCCAAAACATCTGCTTTGATAAAATTTCTTAAAGAATCAAGAGAACAGAAGCCAGCAGCAAAGTCAGTAGTGTTTTCACAATTTCGCAAGTTGTTGGTGTTATTGGAAGCACCTTTGAAGGAGGCTGGTTTCAAGGCTTTGCGCATTGATGGCTCAATGACTCCTAAACAGAGGGCTAACGTTATTGATCAATTTCAAGGCACTAAAGAAAATGCACCAACCATTCTGCTTGCAGGCCCTGTGCCTTCAGGTGCAGAAATAAATCTCACTGCTGCCACCATGGTGTATTTCATGGAGCCATGGTGGAATCCAGCTGTCGAGGAACAGGCCATGAATTGCATCCATCGTATTGGACAGAAAGAGGCTGTGAAGATTGTTAGATTGGTTGCTCGGGACAGCATTGAGGAAAAGATACTGATGTTGCAGGAGAAGAAGAGAGAACTAGCAAGAAGTGATTTTGGTCAAATCAACGATAAAGATCTATGTTTCCTTATGTCCGAGTAA 2805 0.5087 MDLGNETNISQPYTQEDGDPKHLGFIYANIIGLRYCSGPVRARQMVAFLREPLHPHSPNAIKVLNTRSVQVGYIDWTVADALSPLIDSELITVKAFVPNRRSKTDRSLSCQIHIFAPLPSFPTVTQLISDRRLRLITQNDFSFKFSLFAPPESVVRFLGFINANIIGLGHCSGAVHAREMVAFLREPLHPHSPNAIKVLNTRSVQVGYIEWTVADALSPLIDCELITVEAIVPNRRSKTDRSLLCQIHIFAPLPSFPTVTQLISERGLHLITRNDASFKISVVTVKETPADSRFKSVDEIFRRFGERLTAKERVSHALEPPESVVRSKLMEHQKEGLWWLLNREESKELPPFWEEREGGEFVNVLTNSSTCLKPEPLRGGILADEMGLGKTLTLLSLIALDKDSGERKGKKRRKIEIGESSATLVVCPPPVFSTWILQLEEHIVPGSLRTYMYHGDKRAKNAEDLMDYDLVLTTYSTLAVEADDPHSPVKKVVWRRIILDEAHGIKNSYAQQSKMVISLNAKRRWAVTGTPIHNGSVDLFSLVAFLHFEPFSEYGYWRSLVRRPLSQGLPSGLSRLQVLMAAISLRRTKDKGLLGLPPKTIETQYVELNSEERELYDQVKEHVTRSMNFTFFIGVKSSAYALSMLFHLCQICTDLALVPNDLATTFCSTNIEEASNNPQLLQKLVEMLQDGVDYECPICTSPSADIIITRCAHIFCRVCILTCLRSRNSCCPLCRQALSGSDLFSAPLEPSKAESTASSSSWDKKLSSKTSALIKFLKESREQKPAAKSVVFSQFRKLLVLLEAPLKEAGFKALRIDGSMTPKQRANVIDQFQGTKENAPTILLAGPVPSGAEINLTAATMVYFMEPWWNPAVEEQAMNCIHRIGQKEAVKIVRLVARDSIEEKILMLQEKKRELARSDFGQINDKDLCFLMSE 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g01447 934 Pfam SNF2-related domain 332 655 IPR000330 GO:0005524|GO:0140658
Adu02g01447 934 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 371 549 IPR014001 -
Adu02g01447 934 SMART ultradead3 325 557 IPR014001 -
Adu02g01447 934 Pfam Zinc finger, C3HC4 type (RING finger) 693 738 - -
Adu02g01447 934 Coils Coil 898 918 - -
Adu02g01447 934 Pfam HIRAN domain 24 116 IPR014905 GO:0003676|GO:0008270|GO:0016818
Adu02g01447 934 Pfam HIRAN domain 159 249 IPR014905 GO:0003676|GO:0008270|GO:0016818
Adu02g01447 934 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 411 924 - -
Adu02g01447 934 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 11 115 - -
Adu02g01447 934 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 156 399 - -
Adu02g01447 934 ProSiteProfiles Zinc finger RING-type profile. 696 735 IPR001841 -
Adu02g01447 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 494 922 IPR027417 -
Adu02g01447 934 Gene3D - 365 588 IPR038718 -
Adu02g01447 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 587 IPR027417 -
Adu02g01447 934 Pfam Helicase conserved C-terminal domain 769 885 IPR001650 -
Adu02g01447 934 SMART HIRAN_2 23 116 IPR014905 GO:0003676|GO:0008270|GO:0016818
Adu02g01447 934 SMART HIRAN_2 158 251 IPR014905 GO:0003676|GO:0008270|GO:0016818
Adu02g01447 934 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 411 924 - -
Adu02g01447 934 Gene3D - 14 135 - -
Adu02g01447 934 Gene3D - 152 270 - -
Adu02g01447 934 ProSitePatterns Zinc finger RING-type signature. 711 720 IPR017907 -
Adu02g01447 934 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 11 115 - -
Adu02g01447 934 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 156 399 - -
Adu02g01447 934 CDD SF2_C_SNF 763 896 - -
Adu02g01447 934 SUPERFAMILY RING/U-box 693 744 - -
Adu02g01447 934 SMART ring_2 696 734 IPR001841 -
Adu02g01447 934 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 772 931 IPR001650 -
Adu02g01447 934 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 680 746 IPR013083 -
Adu02g01447 934 SMART helicmild6 800 885 IPR001650 -
Adu02g01447 934 Gene3D - 597 929 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g01447 Adu-Chr2 56752519 56756379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g01447 157 933 RAD5 or RAD16-like Gene Family AT5G05130 52.000 0.0 818
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Adu02g01447 SNF2_N 2.4e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g01447 K15711 - fve:101311093 828.165