Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g01417 ATGTCGCTCACGGAAAAGGGGACTGCTGCCGCCGTCACATGCCTCGCCATTACCGTCGATTTTGCCGGGAGAAGATGCGTGGAAAGAAGAGCCGTGGGTCAGGCCAGAGATCGCCGAGGGGGAGAGAGCTGCCGTTGCGTCTACTGCAGGCTCGCCATCGTCGCCATCATGGAGCACCAGGAGGCCGTCACCGGTGCGAGCTCGCGGAGGGAGAGAGGGGTTATGGCCTTGGAGAAATTTTATAACGAGCACAAATATCCCATGGAGGAAATGAAACAAGATCTTGCTGAAGAGTTAGGGTTGACTAAGAAGCAAATTTCTGGATGGTTTTGCCACAAAAGGTGCTTTGCTGATAAAAGAGGAATGGTAAAGGAGCTTCATAGGAAGCTTCATGTAGAATTTCCAAGAGAAGTTCTTGCCACCATATACGACAGTCTGAAGGCGGTGTTCGAGAAAGTTTTCGATGGAGAAAGAAAGGATGTAATCGCAAAAGTGACAGTGAAGGCAGAAGAAAATCGCAACAGCTCGCTAAAGCCAGCAACAATGTTACAGCGACATTCTAATTGGAGGAGAACGCCAAAGAGGACATCATCGTCGGAGAAAGTCGTCGCTGCAGCAGATTGCGCCGAAGCAGATCCCAGTGTAGATATTGATGGTATTCTTGAGCTTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCGGGTGCCATTATTCCTACTTCGGCGGCTATAGGTTTGCACTTTTACCCGATATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAACAAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGCCCTTGGATTGATGTTGCATATTCAGCTCCTGTTGCAGTAGCTACTGCTGTTTTCTAG 948 0.4789 MSLTEKGTAAAVTCLAITVDFAGRRCVERRAVGQARDRRGGESCRCVYCRLAIVAIMEHQEAVTGASSRRERGVMALEKFYNEHKYPMEEMKQDLAEELGLTKKQISGWFCHKRCFADKRGMVKELHRKLHVEFPREVLATIYDSLKAVFEKVFDGERKDVIAKVTVKAEENRNSSLKPATMLQRHSNWRRTPKRTSSSEKVVAAADCAEADPSVDIDGILELVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYEQIVLHFLLGVACYMGREWELSFRLGMRPWIDVAYSAPVAVATAVF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g01417 315 Gene3D - 71 119 - -
Adu02g01417 315 SUPERFAMILY Homeodomain-like 74 115 IPR009057 -
Adu02g01417 315 CDD homeodomain 74 115 IPR001356 GO:0003677
Adu02g01417 315 Pfam Homeodomain 75 114 IPR001356 GO:0003677
Adu02g01417 315 Pfam Photosynthetic reaction centre protein 213 315 IPR000484 GO:0009772|GO:0019684|GO:0045156
Adu02g01417 315 ProSiteProfiles 'Homeobox' domain profile. 77 120 IPR001356 GO:0003677
Adu02g01417 315 SUPERFAMILY Bacterial photosystem II reaction centre, L and M subunits 212 315 IPR036854 GO:0009772|GO:0019684|GO:0045156
Adu02g01417 315 Gene3D - 217 315 IPR036854 GO:0009772|GO:0019684|GO:0045156
Adu02g01417 315 PANTHER PHOTOSYNTHETIC REACTION CENTRE, L/M-RELATED 211 315 - -
Adu02g01417 315 SMART HOX_1 68 124 IPR001356 GO:0003677
Adu02g01417 315 PANTHER PHOTOSYSTEM II PROTEIN D1 211 315 IPR000484 GO:0009772|GO:0019684|GO:0045156
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g01417 Adu-Chr2 54826079 54834996 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g01417 74 125 Homeobox Transcription Factor Family AT4G03250 75.000 7.31e-18 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Adu02g01417 Photo_RC 2.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g01417 K02703 - aof:CCL56_pgp001 201.06