LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu02g01404	ATGGGAGAAAAAGATAGTAGAGGGAAGCTGGGTAAAAGTTCCGATCTATCATCTCTCCCTCTCTGTCGCTCTTGCCCTATCCCTATCTCTCTCTCCTGTCTGGCTGTCTCATTTGCCAATTTCAATTTTCGTTTGCTCACTGCGATTCAGGTTATGGAGCCTTTGGAAATTGATCTTGTGGATATTCCTGATACTCCAGATAGATTAACTACCAGGCCTGGTGATCAGAAACATGTTCGGAATCCTGAGAAGAGGGAGAAGGTCTTCCCTGCTGCTGATGAAATGAAGAAACTCAGCAACTATATAATACTTTCCCCATCAAAGGCACCTTATCCTTCTTATAATGGCCCCTTCTTCAGAAAAACTCAAACTGAGAAAACTTTAGGACTTGGGACAGCACACTCTATTGGTGCTGAAAAGATGGAGAGAGGGAAAACTGTAAGCTCTAGATTTCCTGCTAAATCATCTCGCCATGGACCTAGGTCTGTTTTAGATTTTACTGAAGAGAATGAGAACTCCCAACAGCTGAAACCAGCTTTCTCACATCATGGATCAAGAGATAAGGCTGTTGAAGATAAGAAAGTAACAAGCGCTGGAAACACTTCATCACGAGTTGTTGCTGATTCTTCTACTGCCTTCAGAGATAAAATGCTACCAGGTCCTAATATATCTCAGGAGCGTGGCAAGGGAATTGCACTGCCTAATGATTCTCATCCTCCACTAAACACTGAAAAGCAACTGTCTTTGCCCCCTCAAATTTCCACCACACCAAGAGTTAGAGGGCAGAAGAGATTGGTACGAAATGGGTGTATTTCACCATATAATATTGCAAATAGAGCAAATCAAGCAACTATAAAGGATAATCACCAAACCAAGGAAGTTGAAGAAAGTCATGCTGTGGATTTAGTTTCTACCAATCCAATTTCTACGATTAGTGTTGAAGATATAGTTGCTGAAGAGAGAGGCTGTAATAGAGTGAAGGGAAAGCAAGTACTTATTCATCCTTCATCATATGGTCTTAACACTGGAACTGTTCGCATGGCTAGCAGCAACCCTGCGACTGATTTTGAGGAGGGCCATTCAGCCAGTAATGCTGTAAGGAATTCACTTAAAATCTCTGGGGGACAAGATGGTTGGAGAACTACACATGCTCATAACAGCATTGATCAGCATCCTTATGATGTGAATGGGCATAATTTACGCAGAAGCCATGATGTTGGAAGATTTATTGCTAGACAAAATATGAACAGAATGGATAGAAGAGACACTCATAGCAGTCAAAGTGGCAAGGATGCACAAGGTTCTTCATCAGATAATGCAGCTCAAGCAACTTCACTGACAATTCGAGAGATAGATCAGTTGACTGTAACTCATCCTGCCACAGGCACACTGAGTAAAAGGCAAAAGAAACGTGGATCAACATCAGGAAATCCTGGGCAATCATCAAGCTCATCCCATAACCCTGTCTTGAATTCTGAAGTAGTAGACTTATCACCAGAACCCAGTTATACCAACAGATTTACTGAAGGCTTAGATGACAATGACAATGACAAAGCTCGAGCAAGGCAAGTAGAAGCAGATGAGAGATTGGCACGTGAACTCCAAGAACAACTGTATCATGATGATATTTTTGAAGGGAGAGGGATTGATGAACATTTAGCCTTGGCACTGCAGCAAGAGGAGAATCTTATTCGTACTTCTTTTGATAATCACCAAACATCAAATCCTATGTTTCCGAGGGCAAATAGTCAGCCTCGTTCACGGCCACATCAAAATCCTTCTAATAGGAGGAGAGTTCCACCTCAAGTTCCTTCCTCTAATAGAATGTCACAGTTGAGGTCACAGTTGAGGAGTCACATCGCAAATCGTTCCCGAAGACCAGCCATATCATCCAGAGGACGACGCCCCCGGTTTCCTGTGGATATGGACTTAAACATGAGGCTTGATATATTGGAAGCATTAGAGGATGCAGTAGGGGATTTTGCAGATTTAGGGATGGGTAATGACATCTTTCTTGCTCAACATGATTTCAATGAACATGATTATGAAATGTTGTTGGCCCTTGATGAGCAAAACCACCGACATACTGGTGCATCCTCCAATCAGATCAATAGTTTGCCGGAGTCCACCATCCAGAATGACAACTTCGCAGAGGCCTGTGCAATATGCCTTGAGACCCCAGGCAAGGGTGAAATTATTCGCCATCTTCCCTGTTTGCACAAATTTCACAAAGATTGTATTGATCCTTGGCTCCATAGGAAAACATCATGCCCGGTGTGCAAGTCATCTATCACCTAA	2298	0.4269	MGEKDSRGKLGKSSDLSSLPLCRSCPIPISLSCLAVSFANFNFRLLTAIQVMEPLEIDLVDIPDTPDRLTTRPGDQKHVRNPEKREKVFPAADEMKKLSNYIILSPSKAPYPSYNGPFFRKTQTEKTLGLGTAHSIGAEKMERGKTVSSRFPAKSSRHGPRSVLDFTEENENSQQLKPAFSHHGSRDKAVEDKKVTSAGNTSSRVVADSSTAFRDKMLPGPNISQERGKGIALPNDSHPPLNTEKQLSLPPQISTTPRVRGQKRLVRNGCISPYNIANRANQATIKDNHQTKEVEESHAVDLVSTNPISTISVEDIVAEERGCNRVKGKQVLIHPSSYGLNTGTVRMASSNPATDFEEGHSASNAVRNSLKISGGQDGWRTTHAHNSIDQHPYDVNGHNLRRSHDVGRFIARQNMNRMDRRDTHSSQSGKDAQGSSSDNAAQATSLTIREIDQLTVTHPATGTLSKRQKKRGSTSGNPGQSSSSSHNPVLNSEVVDLSPEPSYTNRFTEGLDDNDNDKARARQVEADERLARELQEQLYHDDIFEGRGIDEHLALALQQEENLIRTSFDNHQTSNPMFPRANSQPRSRPHQNPSNRRRVPPQVPSSNRMSQLRSQLRSHIANRSRRPAISSRGRRPRFPVDMDLNMRLDILEALEDAVGDFADLGMGNDIFLAQHDFNEHDYEMLLALDEQNHRHTGASSNQINSLPESTIQNDNFAEACAICLETPGKGEIIRHLPCLHKFHKDCIDPWLHRKTSCPVCKSSIT	765

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu02g01404	765	MobiDBLite	consensus disorder prediction	413	517	-	-
	Adu02g01404	765	MobiDBLite	consensus disorder prediction	374	400	-	-
	Adu02g01404	765	PANTHER	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	519	763	-	-
	Adu02g01404	765	PANTHER	-	519	763	-	-
	Adu02g01404	765	Coils	Coil	516	536	-	-
	Adu02g01404	765	MobiDBLite	consensus disorder prediction	428	509	-	-
	Adu02g01404	765	MobiDBLite	consensus disorder prediction	569	618	-	-
	Adu02g01404	765	ProSiteProfiles	Zinc finger RING-type profile.	720	761	IPR001841	-
	Adu02g01404	765	MobiDBLite	consensus disorder prediction	569	635	-	-
	Adu02g01404	765	MobiDBLite	consensus disorder prediction	374	393	-	-
	Adu02g01404	765	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	686	765	IPR013083	-
	Adu02g01404	765	MobiDBLite	consensus disorder prediction	195	209	-	-
	Adu02g01404	765	CDD	RING-H2_PA-TM-RING	720	761	-	-
	Adu02g01404	765	MobiDBLite	consensus disorder prediction	133	229	-	-
	Adu02g01404	765	Pfam	Ring finger domain	719	761	IPR001841	-
	Adu02g01404	765	SUPERFAMILY	RING/U-box	719	764	-	-
	Adu02g01404	765	MobiDBLite	consensus disorder prediction	413	427	-	-
	Adu02g01404	765	SMART	ring_2	720	760	IPR001841	-
	Adu02g01404	765	MobiDBLite	consensus disorder prediction	166	180	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu02g01404	Adu-Chr2	52886946	52898869	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu02g01404	513	765	C3H Transcription Factor Family	AT1G04790	50.192	1.38e-66	231

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu02g01404	-		-	aprc:113872307	833.558