Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g01319 ATGGCAGATCCAGCTAGTTATGGGAATTATGACCGTGATATTGAGCAAGCACTAATTATTTTAAAAAAGGGCAGTCAATTAGTAAAGTATTGTCGAAAAGGGAAGCCAAAAGTTGTTCCATTTAGGCTCTCAGCAGATGAAACAAAGCTGATTTGGCTTTCTCATGGAAAGGAAAAGAGTCTAAAGTTATCTTCTGTTTCACGCATAGTCCCTGGACAGAGAACAGCTGTCTTTAGAAGATATTTGCGCCCTGAAAAGGACTACCTGTCATTTTCACTTATTTACAAAAAAGGGGAACGATCACTTGATTTGATCTGCAAGGACAAAGCTGAGGTGGAGGTATGGTTTGCGGGCCTTAACGCATTAATATCTTCTGGACATAATAGTAAGCGCCCTAGAAGTGAGTTTACAGATGATTGTTCTGACTTTGCTCATAATGAAAGCTTCAAATATGCCAACGACATAGAATCTCTCGGAGATGTCTTCATATGGGGAAGAATTTGGGCACATGGAGCCTCACATGATGGGTTTGGGAGTCAGGTCCTTTCGACAAAGAATGTGCTAACTCCTAAGTCATTAGAGTCTAATATTGTTATTGATGTTCATCAGATCGGGTGTGGTGTACATCACATTGCTCTCATTACAAGGCAAGGAGAGGTGTTTACATGGGGAGATGACTCTGGAGGGAGACTTGGTCATGGGCTTCATAAAAATCGTGGGAGACTGCAACTCGTGGAGTCTTTAGCTGTTACTAGTGTAGGTTTTGTTGCATGTGGTGAATACCATACTTGTGCTCTGTCTACACATGGTGATATATTTACTTGGGGTGATGACATACATAATGCAGGACTTCTTGGGCATGGCACTGATGTGAGCCATTGGATACCAAAGAAGATTGGAGGACCTTTAGATGGACTTCTCGTTGTATCTGTAGCATGTGGCACATGGCATTCAGCATTGGTTACCTCCATTGGAAAACTGTTTACCTTTGGTGATGGAAAATTCGGTGTCTTGGGCCATGGAGATCGAGATAGTGTATCATATCCGAAGGAGGTGCGCTTAATGTGTGGACAAAGGGCAATCAAAGTTGCATGTGGAGTATGGCACACTGCAGCAATTATAGAGGTTGTTGATCATTGTGGTACAAATGCATCTTCATCTAGGAAGCTTTTCACATGGGGCGATGGCGACCAATATCGTCTTGGCCATGCTAGCAAGAATACCTATCTTCAACCAACTTGTGTCTCTGCACTGAGTGACTATAGTTTTCATCAGGTAGCATGTGGGACCACTATGACTGTTGCCCTCACTGCCTCTGGTCAGGTCTTTACTATGGGAGAAACTAAATATGGTCAACTAGGAAATCCAATGTCCAATGGAAGAACACCAAGTCTGGTCAAAGATAATTTAGTGGGTGAGGTTGTAGAGGACATATCATGTGGTTCACATCATGTGGCTGTGGTGACTTCAAAAGGTGAACTATATACATGGGGCAGAGGTGCCAATGGAAGATTGGGACATGGAGACACAGATGACCATAACACACCAATTTTGGTTGAAGCCTTTAGAGACAGACACGTAAAGCATGTTTCGTGTGGCTCAAGCTTTACATTTTGTGTATGCATACATAAGTGGATTTCTGGAGCTGACCAATCACTTTGCTCGGGTTGCCGGCAACCATTTGGTTTTACAAGAAAAAGGCATAATTGTTATAATTGTGGATTGGTGTATTGCCATCCTTGTAGCTCCAAAAAGTCAATAAGAGCAGCATTGGCTCCAACACCTAGCAAACCACATCGTGTGTGTGACTCTTGTTATTCTAAGCTTAAAGTTCCTGAGACTAGCAGTGCTTCTTCCACTTATAATAAGGATGTTACTCGTGCTCATAGAAAGGAAAGATTTGATACAAGAGAGGCAAAGAATGCAAAAATTCTCTCATCTCCCAGCACCGATCCTGTAAAATACTTTGAGACATTGACGGGTAAGAATATAACTTTGCATGACTCTTCTTCCACAGTCCGAGTTGCTCAAGCTCCTTTGCGTATTCCAATGGATAATGTGTTTCCAAGTTCATCTAGTGTCATGCAGAATGCTTCTGTTCCCGTTACACAATCAACTCAACCTCCAACTCCACCTACACCAAGTAATTTAAGACCTCCATCACCGTATGCAAGGAGACCAAGTCCACCACGTTCTAGTTCCCCCGGATTTTCAAGAAGCCTCATTGATAGTTTAAAGAAGACAAATGATCTTTTGAATCAAGAAGTCTCTAAATTAAAAAACCAAAATCAAAATTTGAAGCAGAAGAGTGACATGCAAGATATCAAGATTCGGGAACTTGAGAAAAAGATTGAGGAATCTACCTCATTGGTTAAAGAGGAATCATCTAAGCATAGAATACTGAAGGAATATCTCCAGTGCATGACAGATCAGTTGAGGGAAGTGACTGAGAACTTGCCACCAGTTCCTGACTATGAATCTTTAATTACCTTGCATACTCATGCTGAGACATTTCTTAAAGAAAATATGGAATTCAAATCCTTATTTGCATCAACGTTGGAATCAAGGTCACAAAGTGCAAATGATTTACATGGCGCACACAATGACTCTCGTAAACAGCCAGAACAAAAAATGGAAGAAACCGTTGATGCTGCTGGAGCTGGTTCATCTATGAATGGAGGAAATGCTCTTCAAGAAAGCAATGAGTCATCTTTGTTGAGTCCAAATAAGCCAAGATCATCTAATCCACACAGACCCGGGAATGAGAAACAAGAAGAAATAGTGACCATCGAACAATTTGAACGTGGTGTTTATGTAACATTTGTAGAATTACCTTCTGGTGGAAAAGTTTTTAAACGAATTAGATTCAGTAAGCGCAAATTTGACGAGACTCAAGCAGCAGAATGGTGGAACCAAAACAAAGATAGGGTGCTTATGAAATATAGTCCAGAATCTGTACAGGATGCAGCTACTGGCTCATCTATTAGCCCCACCAGAAGTTGA 3003 0.4136 MADPASYGNYDRDIEQALIILKKGSQLVKYCRKGKPKVVPFRLSADETKLIWLSHGKEKSLKLSSVSRIVPGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDKAEVEVWFAGLNALISSGHNSKRPRSEFTDDCSDFAHNESFKYANDIESLGDVFIWGRIWAHGASHDGFGSQVLSTKNVLTPKSLESNIVIDVHQIGCGVHHIALITRQGEVFTWGDDSGGRLGHGLHKNRGRLQLVESLAVTSVGFVACGEYHTCALSTHGDIFTWGDDIHNAGLLGHGTDVSHWIPKKIGGPLDGLLVVSVACGTWHSALVTSIGKLFTFGDGKFGVLGHGDRDSVSYPKEVRLMCGQRAIKVACGVWHTAAIIEVVDHCGTNASSSRKLFTWGDGDQYRLGHASKNTYLQPTCVSALSDYSFHQVACGTTMTVALTASGQVFTMGETKYGQLGNPMSNGRTPSLVKDNLVGEVVEDISCGSHHVAVVTSKGELYTWGRGANGRLGHGDTDDHNTPILVEAFRDRHVKHVSCGSSFTFCVCIHKWISGADQSLCSGCRQPFGFTRKRHNCYNCGLVYCHPCSSKKSIRAALAPTPSKPHRVCDSCYSKLKVPETSSASSTYNKDVTRAHRKERFDTREAKNAKILSSPSTDPVKYFETLTGKNITLHDSSSTVRVAQAPLRIPMDNVFPSSSSVMQNASVPVTQSTQPPTPPTPSNLRPPSPYARRPSPPRSSSPGFSRSLIDSLKKTNDLLNQEVSKLKNQNQNLKQKSDMQDIKIRELEKKIEESTSLVKEESSKHRILKEYLQCMTDQLREVTENLPPVPDYESLITLHTHAETFLKENMEFKSLFASTLESRSQSANDLHGAHNDSRKQPEQKMEETVDAAGAGSSMNGGNALQESNESSLLSPNKPRSSNPHRPGNEKQEEIVTIEQFERGVYVTFVELPSGGKVFKRIRFSKRKFDETQAAEWWNQNKDRVLMKYSPESVQDAATGSSISPTRS 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g01319 1000 MobiDBLite consensus disorder prediction 865 879 - -
Adu02g01319 1000 Coils Coil 742 797 - -
Adu02g01319 1000 Gene3D - 145 380 IPR009091 -
Adu02g01319 1000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 557 616 IPR013083 -
Adu02g01319 1000 Pfam Transcription factor regulating root and shoot growth via Pin3 930 981 IPR013591 -
Adu02g01319 1000 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 204 214 IPR000408 -
Adu02g01319 1000 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 218 269 IPR000408 -
Adu02g01319 1000 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 153 986 - -
Adu02g01319 1000 MobiDBLite consensus disorder prediction 705 729 - -
Adu02g01319 1000 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 147 - -
Adu02g01319 1000 MobiDBLite consensus disorder prediction 859 927 - -
Adu02g01319 1000 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 363 373 IPR000408 -
Adu02g01319 1000 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 270 324 IPR000408 -
Adu02g01319 1000 MobiDBLite consensus disorder prediction 891 915 - -
Adu02g01319 1000 CDD PH_PLC_plant-like 12 124 - -
Adu02g01319 1000 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 153 986 - -
Adu02g01319 1000 Gene3D - 13 132 IPR011993 -
Adu02g01319 1000 SUPERFAMILY FYVE/PHD zinc finger 544 615 IPR011011 -
Adu02g01319 1000 Gene3D - 381 556 IPR009091 -
Adu02g01319 1000 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 325 376 IPR000408 -
Adu02g01319 1000 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 440 491 IPR000408 -
Adu02g01319 1000 SUPERFAMILY RCC1/BLIP-II 159 545 IPR009091 -
Adu02g01319 1000 Pfam Regulator of chromosome condensation (RCC1) repeat 325 373 IPR000408 -
Adu02g01319 1000 Pfam Regulator of chromosome condensation (RCC1) repeat 218 266 IPR000408 -
Adu02g01319 1000 Pfam Regulator of chromosome condensation (RCC1) repeat 439 488 IPR000408 -
Adu02g01319 1000 Pfam Regulator of chromosome condensation (RCC1) repeat 390 436 IPR000408 -
Adu02g01319 1000 Pfam Regulator of chromosome condensation (RCC1) repeat 270 320 IPR000408 -
Adu02g01319 1000 Pfam Regulator of chromosome condensation (RCC1) repeat 491 540 IPR000408 -
Adu02g01319 1000 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 13 147 - -
Adu02g01319 1000 SMART fyve_4 540 611 IPR000306 GO:0046872
Adu02g01319 1000 SUPERFAMILY PH domain-like 13 123 - -
Adu02g01319 1000 MobiDBLite consensus disorder prediction 695 740 - -
Adu02g01319 1000 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 492 543 IPR000408 -
Adu02g01319 1000 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Adu02g01319 1000 Pfam FYVE zinc finger 544 609 IPR000306 GO:0046872
Adu02g01319 1000 PRINTS Chromosome condensation regulator RCC1 signature 327 341 IPR000408 -
Adu02g01319 1000 PRINTS Chromosome condensation regulator RCC1 signature 220 236 IPR000408 -
Adu02g01319 1000 PRINTS Chromosome condensation regulator RCC1 signature 487 508 IPR000408 -
Adu02g01319 1000 PRINTS Chromosome condensation regulator RCC1 signature 270 286 IPR000408 -
Adu02g01319 1000 PRINTS Chromosome condensation regulator RCC1 signature 311 327 IPR000408 -
Adu02g01319 1000 PRINTS Chromosome condensation regulator RCC1 signature 429 447 IPR000408 -
Adu02g01319 1000 ProSiteProfiles BRX domain profile. 927 982 IPR013591 -
Adu02g01319 1000 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 388 439 IPR000408 -
Adu02g01319 1000 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 548 610 IPR017455 -
Adu02g01319 1000 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 311 321 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g01319 Adu-Chr2 41620736 41626466 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g01319 930 982 Major Intrinsic Protein MIP AT1G31880 47.170 1.50e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g01319 - - lang:109339054 1221.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu02g01319 02 41620736 41626466 Adu02g01319 02 41620736 41626466 ECH