Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g01315 ATGGCGCACCGCTTGCTGAGGGACCATGAAGCTGACGGGTGGGAGCGCGCAGACTTCCCCATCATCTGCGAGTCCTGCCTTGGCGACAACCCTTACGTTCGAATGACAAGAGCTGAGTATGACAAGGAATGCAAGATTTGTACACGGCCATTTACTGTCTTCAGATGGAGACCTGGTCGGGATGCGAGGTATAAAAAGACTGAGATCTGCCAGACATGTAGCAAGTTGAAAAATGTCTGTCAAGTGTGTCTTCTGGATCTAGAATACGGGCTGCCAGTTCAAGTCCGTGACACAGCTCTCAGTATTGATTCCAATGATGCCATTCCAAAAAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCACGACCGCAAGGCTAGAGCTGGTATAGATTATGAATCTTCTTATGGTAAAGCACGCCCAAATGATACTATCTTGAAGCTACAAAGGACAACACCATATTACAAAAGAAACCGGGCACATATTTGCAGTTTCTACATAAGGGGTGAATGTACTAGAGGAGCTGAATGCCCTTATCGGCATGAGATGCCAGTAACTGGGGAGCTGTCTCAACAAAATATTAAAGATCGTTATTATGGTGTCAATGATCCTGTGGCTTTGAAGCTACTTGGCAAGGCTGGAGAGATGACCTCTCTGGAGGCTCCCGAGGATGAGAGCATCAAAACCCTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGACTTGCGGGATCACTTCTATGCGCATGGTGAAATTGAATCTATAAAAATGGTTCTTCAACGGGCTTGTGCTTTTGTAACCTATACAACCAGAGAAGGTGCAGAAAAGGCAGCCGAAGAACTATCCAACAAGCTGGTTATTAAAGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACAGCAAAACCGGAGTCAGATGGCTCTGATCAAGCAAGGCAGCAAGCAGCTGTGGCTCACAGTGGGTTGTTGCCTCGTGCAGTTATATCGCAACAGCAGAACCAGGATCTAGGCCAAGGAATGCCTTACTATAACAATCCACCTCCTCCTCAGCAAGAAAGAAGCTATTACCCTTCAATGGATCCTCAAAGAATGGGTGCTCTTATTCCATCTCAAGAGGGTCCTCCAGGTGGACCTAGTGGATCAGGTGAGAACAAACCCAGTATGGAGAAGCCACAAATGCAACAACATTATACCCATCCAATGATGCCTCCTCCTCCTCCTGGCCAATATCATCATCAGCCTCCTCATCAGTATTATCCTCCTCCATATGGTTATATGCCACCAGTTCCCCCGTATCAGCAATATCCACCACCATATAGTGCTCAAATGGTGCCATCTCAGCCACCAGCTGCAAATCATCCATATCACCATCATCCGATGCAGCCAGGTTCTTCACAAACAGGGTCTGGACAGGTTGGCTCTGGATCTGCACCAGCTGAAGCTGGAACATCAGCATCAGGGTCACAGCAGCAGCCATTCAAAATGACCGGAATGATAACTGCAACATGCAACAAGAAAAAAGGGCCCTACTATTATTCCCTCGTGATATTGGACGAGAACATGCACGCAAGCCTATCCTTAACAATGCTTACAAACAAAAGGAATATAAACTATGTCTTATCCAAACCTCCTCACCAACCCTCACCGACACCAATAAACAGCCATCACCATCCCAAACTGAAACCCCTAACAAGCACAACAACTATAACCGAATAA 1725 0.4678 MAHRLLRDHEADGWERADFPIICESCLGDNPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTSLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTAKPESDGSDQARQQAAVAHSGLLPRAVISQQQNQDLGQGMPYYNNPPPPQQERSYYPSMDPQRMGALIPSQEGPPGGPSGSGENKPSMEKPQMQQHYTHPMMPPPPPGQYHHQPPHQYYPPPYGYMPPVPPYQQYPPPYSAQMVPSQPPAANHPYHHHPMQPGSSQTGSGQVGSGSAPAEAGTSASGSQQQPFKMTGMITATCNKKKGPYYYSLVILDENMHASLSLTMLTNKRNINYVLSKPPHQPSPTPINSHHHPKLKPLTSTTTITE 574
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Adu02g01315 574 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 466 - -
Adu02g01315 574 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 466 IPR039171 GO:0003723
Adu02g01315 574 MobiDBLite consensus disorder prediction 339 425 - -
Adu02g01315 574 MobiDBLite consensus disorder prediction 440 494 - -
Adu02g01315 574 SUPERFAMILY RNA-binding domain, RBD 221 309 IPR035979 GO:0003676
Adu02g01315 574 MobiDBLite consensus disorder prediction 301 321 - -
Adu02g01315 574 MobiDBLite consensus disorder prediction 544 574 - -
Adu02g01315 574 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Adu02g01315 574 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Adu02g01315 574 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Adu02g01315 574 SMART rrm1_1 229 297 IPR000504 GO:0003723
Adu02g01315 574 Gene3D - 149 208 - -
Adu02g01315 574 MobiDBLite consensus disorder prediction 401 425 - -
Adu02g01315 574 Gene3D - 212 309 IPR012677 -
Adu02g01315 574 MobiDBLite consensus disorder prediction 462 494 - -
Adu02g01315 574 CDD RRM_RBM22 227 300 - -
Adu02g01315 574 Pfam Torus domain 138 194 IPR032297 -
Adu02g01315 574 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Adu02g01315 574 SMART c3hfinal6 157 183 IPR000571 GO:0046872
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Adu02g01315 Adu-Chr2 41428868 41433633 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g01315 215 289 Eukaryotic Initiation Factors Gene Family AT1G49760 33.750 9.71e-07 50.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g01315 K12872 - gmx:100779917 786.949