Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Adu02g01315 | ATGGCGCACCGCTTGCTGAGGGACCATGAAGCTGACGGGTGGGAGCGCGCAGACTTCCCCATCATCTGCGAGTCCTGCCTTGGCGACAACCCTTACGTTCGAATGACAAGAGCTGAGTATGACAAGGAATGCAAGATTTGTACACGGCCATTTACTGTCTTCAGATGGAGACCTGGTCGGGATGCGAGGTATAAAAAGACTGAGATCTGCCAGACATGTAGCAAGTTGAAAAATGTCTGTCAAGTGTGTCTTCTGGATCTAGAATACGGGCTGCCAGTTCAAGTCCGTGACACAGCTCTCAGTATTGATTCCAATGATGCCATTCCAAAAAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCACGACCGCAAGGCTAGAGCTGGTATAGATTATGAATCTTCTTATGGTAAAGCACGCCCAAATGATACTATCTTGAAGCTACAAAGGACAACACCATATTACAAAAGAAACCGGGCACATATTTGCAGTTTCTACATAAGGGGTGAATGTACTAGAGGAGCTGAATGCCCTTATCGGCATGAGATGCCAGTAACTGGGGAGCTGTCTCAACAAAATATTAAAGATCGTTATTATGGTGTCAATGATCCTGTGGCTTTGAAGCTACTTGGCAAGGCTGGAGAGATGACCTCTCTGGAGGCTCCCGAGGATGAGAGCATCAAAACCCTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGACTTGCGGGATCACTTCTATGCGCATGGTGAAATTGAATCTATAAAAATGGTTCTTCAACGGGCTTGTGCTTTTGTAACCTATACAACCAGAGAAGGTGCAGAAAAGGCAGCCGAAGAACTATCCAACAAGCTGGTTATTAAAGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACAGCAAAACCGGAGTCAGATGGCTCTGATCAAGCAAGGCAGCAAGCAGCTGTGGCTCACAGTGGGTTGTTGCCTCGTGCAGTTATATCGCAACAGCAGAACCAGGATCTAGGCCAAGGAATGCCTTACTATAACAATCCACCTCCTCCTCAGCAAGAAAGAAGCTATTACCCTTCAATGGATCCTCAAAGAATGGGTGCTCTTATTCCATCTCAAGAGGGTCCTCCAGGTGGACCTAGTGGATCAGGTGAGAACAAACCCAGTATGGAGAAGCCACAAATGCAACAACATTATACCCATCCAATGATGCCTCCTCCTCCTCCTGGCCAATATCATCATCAGCCTCCTCATCAGTATTATCCTCCTCCATATGGTTATATGCCACCAGTTCCCCCGTATCAGCAATATCCACCACCATATAGTGCTCAAATGGTGCCATCTCAGCCACCAGCTGCAAATCATCCATATCACCATCATCCGATGCAGCCAGGTTCTTCACAAACAGGGTCTGGACAGGTTGGCTCTGGATCTGCACCAGCTGAAGCTGGAACATCAGCATCAGGGTCACAGCAGCAGCCATTCAAAATGACCGGAATGATAACTGCAACATGCAACAAGAAAAAAGGGCCCTACTATTATTCCCTCGTGATATTGGACGAGAACATGCACGCAAGCCTATCCTTAACAATGCTTACAAACAAAAGGAATATAAACTATGTCTTATCCAAACCTCCTCACCAACCCTCACCGACACCAATAAACAGCCATCACCATCCCAAACTGAAACCCCTAACAAGCACAACAACTATAACCGAATAA | 1725 | 0.4678 | MAHRLLRDHEADGWERADFPIICESCLGDNPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTSLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTAKPESDGSDQARQQAAVAHSGLLPRAVISQQQNQDLGQGMPYYNNPPPPQQERSYYPSMDPQRMGALIPSQEGPPGGPSGSGENKPSMEKPQMQQHYTHPMMPPPPPGQYHHQPPHQYYPPPYGYMPPVPPYQQYPPPYSAQMVPSQPPAANHPYHHHPMQPGSSQTGSGQVGSGSAPAEAGTSASGSQQQPFKMTGMITATCNKKKGPYYYSLVILDENMHASLSLTMLTNKRNINYVLSKPPHQPSPTPINSHHHPKLKPLTSTTTITE | 574 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Adu02g01315 | 574 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE | 1 | 466 | - | - | |
Adu02g01315 | 574 | PANTHER | PRE-MRNA-SPLICING FACTOR RBM22 | 1 | 466 | IPR039171 | GO:0003723 | |
Adu02g01315 | 574 | MobiDBLite | consensus disorder prediction | 339 | 425 | - | - | |
Adu02g01315 | 574 | MobiDBLite | consensus disorder prediction | 440 | 494 | - | - | |
Adu02g01315 | 574 | SUPERFAMILY | RNA-binding domain, RBD | 221 | 309 | IPR035979 | GO:0003676 | |
Adu02g01315 | 574 | MobiDBLite | consensus disorder prediction | 301 | 321 | - | - | |
Adu02g01315 | 574 | MobiDBLite | consensus disorder prediction | 544 | 574 | - | - | |
Adu02g01315 | 574 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 230 | 288 | IPR000504 | GO:0003723 | |
Adu02g01315 | 574 | ProSiteProfiles | Zinc finger C3H1-type profile. | 157 | 184 | IPR000571 | GO:0046872 | |
Adu02g01315 | 574 | SUPERFAMILY | CCCH zinc finger | 159 | 182 | IPR036855 | GO:0046872 | |
Adu02g01315 | 574 | SMART | rrm1_1 | 229 | 297 | IPR000504 | GO:0003723 | |
Adu02g01315 | 574 | Gene3D | - | 149 | 208 | - | - | |
Adu02g01315 | 574 | MobiDBLite | consensus disorder prediction | 401 | 425 | - | - | |
Adu02g01315 | 574 | Gene3D | - | 212 | 309 | IPR012677 | - | |
Adu02g01315 | 574 | MobiDBLite | consensus disorder prediction | 462 | 494 | - | - | |
Adu02g01315 | 574 | CDD | RRM_RBM22 | 227 | 300 | - | - | |
Adu02g01315 | 574 | Pfam | Torus domain | 138 | 194 | IPR032297 | - | |
Adu02g01315 | 574 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 228 | 301 | IPR000504 | GO:0003723 | |
Adu02g01315 | 574 | SMART | c3hfinal6 | 157 | 183 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Adu02g01315 | Adu-Chr2 | 41428868 | 41433633 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Adu02g01315 | 215 | 289 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 33.750 | 9.71e-07 | 50.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Adu02g01315 | K12872 | - | gmx:100779917 | 786.949 |