Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g01258 ATGGAGGAACATTCAGTAACTGAAGGAAAAGAAGGAGGAGGAGCCTTCCAGAAGGTTCTAACCCCTTCCAAAAGCGACGACGTCGCATTCTTCAACGGCAAGCCTGTCATTGTCGCCCAGCCCCTCACAGTGGTCCGCGCCCTCACTAGCACCCGTGTCCTTGCCCCTCACAACCCTGCCGACTCGCCGAATCAACCCAGAGGAAACGAAACAACCACCGGAAACAACGCAAATGAGGAAAAGCCGCAAGAACAGGAAGCAGATTCGAAACACGTTTCTTCTGAAATACAAGAAGAAACGCGTTTCGAGGACGACGGAGATTCTCCTTCGGAGGTGGTGATGGAAACGCAGATTGAGCAACAAGAGCCCGAAGGCGAAGGTAAACGCTCTATGATGTCGTTTGAGGAGTTTCTAAAGGCTACGAACACGAAAGTTGCGTCGGAAGAGGAGGCTCTGAAACCAGTTGCTGAGAGCGTTGTTGTTCGCGTCAAGGAGGAACCGGTAGTCGCCGACGATGGCGACGTAGCGATTCTGAGTTTGAATCAAGCGCGTAATGCTGAAGTGAAGAAGAAGGATGAAGAGAGGATTCCAGGACTCGAGGACGGTGAGTTCGATGTGCCGCAAGGGTGGTTGCTTATGGGAAGAAAGGTGGAGATTGCTCTTTCGATGGCGAAGGGAGTGCGGCGATTGGTAGATAATGAGATCGTTCACTTCGATTTCCCTCGAGCTAATTCGTCTCGCAAGTCTCAATCCCTCGTTCGCATCTCAACTAAGCTTTCCGGATTGGTTGGGAGGCTTCCAATGGAGTGGGCGAACACTGTAGTTCCTCTTGTGCAATCTGGGTTTGTTCAGGTTCGAGGGCGATGCATAGGTGTACCGCATAGCCTCAAAATGATGCAAGAAATCATGCTGTTAGTGAGCTTTTATATTCACCAATCTGTATTCACAGAATGTGTTGAAAACTCTTGGAGCATAGAAGCTTGTCGTAACCGTAGCTCTACCATCAAGCCACTTCCTCAACTGTTCAAAATGCTAGAGATTAAACCATATCAGAAGGCCTATTTCACCCCTGATGATGTTTCCAAAAAGCGGCCTCGAAATACCGAGGTTGACCCAGGTGAAGCTGTAGCCTTACATATGATCAAGCAAAGAAAGTTGGCTGAATCAGGAAAGGGTATCCAGCAGATTCCGGAGCAGAATGAGAATGAACAATCTCTTTCAGAGTCGGCTTTGAATAAGCTCATTGGAGCTTCAGAAATCTATGACCTGGAGGAGAAGGATTCGCCACGAACACTGAAGTGTGTTCTAAAGCATTACCAGAAACAAGCTCTCTATTGGATGTCAGAGATAGAAAATGGGAATAGGGCCGATAGTGCTGAGAGTAATCTTAATCCTTGCTGGTCTGCCTACAAAATATGTGAGGGAAGAATGATTTATGTGAATATCTTCACTGGAGAAGCAACAACCACAATTCCAAGAGCTACACAGATGGCAAGAGGAGGGATTCTAGCAGATTCAATGGGACTTGGAAAGACGGTCATGACAATTGCTCTGATTCTCACTAACACAGGCAGGGTTAACTCAGAAAATGATAGTCTTGTCACTGGTAGGAGGAGAAGCATATATAGGCCTAATGGTGGCACTCTTATTATTTGTCCGGTGGCATTATTAGGTCAATGGAAGGATGAGCTTGAAACACATTCAAAAGAAGACAGTCTCTCCATATTTGTTCATTATGGTGGGGGTAGAACCACTGATCCTGAGTTGCTTGCAAGGCATGATGTTGTCTTAACAACATATAATGTCCTGTCAGGAGCATATAAAAATGATGGAGAGAATAGTATCTACCACGGGGTCCAGTGGTACAGGGTTGTGCTAGATGAAGCTCATACTATTAAAGCCCATAAAAGCCAGGGTGCTATGGCTGCATTTGCTTTGACCTCACACTGCCGCTGGTGTCTAACTGGAACCCCTCTTCAGAATAGCTTGGAAGACCTATTCAGCCTGTTGTGCTTCTTGCGTGTTGAACCTTGGTGCAACTGGGCATGGTGGAATAAATTGATTCAAAGGCCTTACGAGAACAATGACCCAACAGCCTTGAAATTGTTTAAGGCCATTTTAAGGACAATGATGTTAAGAAGAACTAAGGAAACTAAGGATAAGCACGGGAGGCCCATTCTTCTCCTGCCACCAGTTGATACTCATTTTGTTGAGTGTGAACAGTCAGAATCTGAACGTGATTTCTATGAAGCCCTCTTCACTAGATCTAAGGTTCAATTTGATCATTATGTTGCACAAGGAAAGGTTTTACACAACTATGCAAATATCCTTGACCTGCTATTGCAATTGAGACGGTGTTGTAACCATCCATTTTTGGTTATGTGCGGTAACTCAGAGAAATATGCCGACTTGAGCAGACTTGCAAGAAAATTCTTGCAATCAAGTGCTGAGTCACTTAACATGTGCAGTAGTCAAAATGATCCACAGAAACAAGCAGAGTTGAATAGACTTGCTAGTAAATTCCTTATCGATACTGATTCTACTTCGAGCTCCATGCAATCTCGTGCATACATTGAGGAGGTCTTGGAGCTTATTCAAAAGGGTGAAGTCTTGGAATGCCCTATATGCATGGAGGCACCAGATGATCCTGTGTTTACCCCTTGTGCACATAGGTTCTGTAGAGAATGCCTATTCAGTCACTGGGGGACATCTGAGGGTGGTAAATGTGCAATTTGTCGTCAGCAACTCAGGAAAAGTGATCTCATTATTTGTCCATCTGAAAGCACGTTCAAGGTTGATATTGCAAACAATATGACAGAGTCTTCAAAGATTTCAAAGCTCTTGGATTACTTGCAAAACATTCAGACATCATCCCCTGGCGAAAAAAGTATTGTGTTCAGTCAATGGACATCGTTCTTTGATCTGTTGGAGAATCCACTGAGAAGGAAAGGAATTGATTTTCTGAGATACGATGGCAAATTGACCCAGAAACAGAGGGAGAATGTTCTGAGTGAATTCAATACAAAAGAGATAAGGGTCTTGTTGATGTCATTAAAAGCTGGTGGGGTTGGCTTAAACTTAACTGCAGCCTCAAATGTTTTTATTATGGATCCATGGTGGAATCCAGCAGTTGAGGAACAAGCAATAATGAGAATTCATCGCATTGGACAGAAGCGAAGGGTTGTTGTTAGAAGATTCATTGTCAAGGGCACAGTGGAAGACCGCTTGCAACAAGTGCAGGCCAGAAAAGAGAGAATGATAGCGGGTGCCCTTACTGATGATGATGTTCGGACTGCTAGGATTCAAGATCTCAAAATGCTATTCACATGA 3330 0.4468 MEEHSVTEGKEGGGAFQKVLTPSKSDDVAFFNGKPVIVAQPLTVVRALTSTRVLAPHNPADSPNQPRGNETTTGNNANEEKPQEQEADSKHVSSEIQEETRFEDDGDSPSEVVMETQIEQQEPEGEGKRSMMSFEEFLKATNTKVASEEEALKPVAESVVVRVKEEPVVADDGDVAILSLNQARNAEVKKKDEERIPGLEDGEFDVPQGWLLMGRKVEIALSMAKGVRRLVDNEIVHFDFPRANSSRKSQSLVRISTKLSGLVGRLPMEWANTVVPLVQSGFVQVRGRCIGVPHSLKMMQEIMLLVSFYIHQSVFTECVENSWSIEACRNRSSTIKPLPQLFKMLEIKPYQKAYFTPDDVSKKRPRNTEVDPGEAVALHMIKQRKLAESGKGIQQIPEQNENEQSLSESALNKLIGASEIYDLEEKDSPRTLKCVLKHYQKQALYWMSEIENGNRADSAESNLNPCWSAYKICEGRMIYVNIFTGEATTTIPRATQMARGGILADSMGLGKTVMTIALILTNTGRVNSENDSLVTGRRRSIYRPNGGTLIICPVALLGQWKDELETHSKEDSLSIFVHYGGGRTTDPELLARHDVVLTTYNVLSGAYKNDGENSIYHGVQWYRVVLDEAHTIKAHKSQGAMAAFALTSHCRWCLTGTPLQNSLEDLFSLLCFLRVEPWCNWAWWNKLIQRPYENNDPTALKLFKAILRTMMLRRTKETKDKHGRPILLLPPVDTHFVECEQSESERDFYEALFTRSKVQFDHYVAQGKVLHNYANILDLLLQLRRCCNHPFLVMCGNSEKYADLSRLARKFLQSSAESLNMCSSQNDPQKQAELNRLASKFLIDTDSTSSSMQSRAYIEEVLELIQKGEVLECPICMEAPDDPVFTPCAHRFCRECLFSHWGTSEGGKCAICRQQLRKSDLIICPSESTFKVDIANNMTESSKISKLLDYLQNIQTSSPGEKSIVFSQWTSFFDLLENPLRRKGIDFLRYDGKLTQKQRENVLSEFNTKEIRVLLMSLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRRVVVRRFIVKGTVEDRLQQVQARKERMIAGALTDDDVRTARIQDLKMLFT 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g01258 1109 SMART ultradead3 479 693 IPR014001 -
Adu02g01258 1109 MobiDBLite consensus disorder prediction 55 110 - -
Adu02g01258 1109 MobiDBLite consensus disorder prediction 55 80 - -
Adu02g01258 1109 ProSiteProfiles Zinc finger RING-type profile. 873 913 IPR001841 -
Adu02g01258 1109 Pfam Zinc finger, C3HC4 type (RING finger) 871 918 - -
Adu02g01258 1109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 422 714 IPR027417 -
Adu02g01258 1109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 727 1099 IPR027417 -
Adu02g01258 1109 Pfam Helicase conserved C-terminal domain 943 1056 IPR001650 -
Adu02g01258 1109 CDD SF2_C_SNF 938 1058 - -
Adu02g01258 1109 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 946 1109 IPR001650 -
Adu02g01258 1109 Pfam HIRAN domain 221 304 IPR014905 GO:0003676|GO:0008270|GO:0016818
Adu02g01258 1109 PANTHER DNA REPAIR PROTEIN RAD5B 364 1108 - -
Adu02g01258 1109 SUPERFAMILY RING/U-box 869 923 - -
Adu02g01258 1109 ProSitePatterns Zinc finger RING-type signature. 888 897 IPR017907 -
Adu02g01258 1109 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 492 676 IPR014001 -
Adu02g01258 1109 Pfam SNF2-related domain 439 792 IPR000330 GO:0005524|GO:0140658
Adu02g01258 1109 SMART helicmild6 974 1056 IPR001650 -
Adu02g01258 1109 SMART HIRAN_2 213 310 IPR014905 GO:0003676|GO:0008270|GO:0016818
Adu02g01258 1109 CDD DEXDc_SHPRH-like 436 714 - -
Adu02g01258 1109 SMART ring_2 873 912 IPR001841 -
Adu02g01258 1109 Gene3D - 730 1109 IPR027417 -
Adu02g01258 1109 MobiDBLite consensus disorder prediction 81 99 - -
Adu02g01258 1109 Gene3D - 486 715 IPR038718 -
Adu02g01258 1109 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 364 1108 - -
Adu02g01258 1109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 866 921 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g01258 Adu-Chr2 35844557 35850553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g01258 136 1108 RAD5 or RAD16-like Gene Family AT5G43530 58.325 0.0 1149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Adu02g01258 SNF2_N 1.7e-80 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g01258 K15505 - gmx:100806677 1345.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu02g01258 02 35844557 35850553 Adu02g01258 02 35844557 35850553 ECH