Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g01231 ATGGAAGAAGCAACAACATCTTCAACATCATCAACAATCATGGCAGCACTCTCCACTCTCTCTCCCACCACCGTCTCCAATCTCACCCACTCCATCATCTCCGCCACCAACCACCGCACCCACCGCCTCGCCCTCCTCCTCTCCTCCCCAACCCTCTTCTCTCTAACCCTCCACTATCTCCATACCCTCTCTCTCCACCAAAAAACCCTCCTCATCGCGCGCCACCTCCTCTCTTCTCTCCACACACTCACTCGCCACGCCGCAATGCCGCCACCATTGTCAACTTCAATGCGGCAACGCGATCTCGACGCGGTTCTCCTCCTTCTCTTGTTCTGCGAGACGCACAACCACAACCCCGAGCTTTTAGAAGATTCCTTTTCGGAATGGAGGGTGAATTTGAGAAGGGCTTTCCGGGAGAAAAATCTTGATCCCTTATGGAGAGGGAATAATAAGGAGGAGGTGGAGGTGGCAGCAGCGGCGGCGGCGGTAGTGGCTTTGCCGGCGGTGGAGGTGGCGGTTGGAGGAAAAGAGTGTGTGATTTGCAAAGAAGAGATGCGCGTGGGGAGGGACGTTTGCGAATTGCCATGTCAGCATTTGTTTCATTGGATGTGCATTTTGCCGTGGCTTGGAAAGAGGAACACTTGTCCCTGCTGCAGGCTCAGGTTGCCGTCCGATGATGTTTTCGGAGAGATCCAACGGCTGTGGGGTGTTTTGGTTAAGATGGGTGGAAAAGAATGTGGAGGCGATGGTGCAGCTGATTTTCAGCTTCCGTCACATGAGAGATTTCTGATTAAGGGCAAAGAAATCCTATGGACAACTCCAAGGAAGACCTCCGATTCTTCCTCCCTCGTTCTTGCTTGTATAGTTGTCGACGATGAAGAAAATGATTATGTCCCCTTCCCTTCTCCCTTGGAGTTTCAAGCACTTGCCCAAGTGTTCCACCAAAAGAATGAGGCCCCTGTTCATGATACAGCTCTCAAAGTTGCTGCTATAAGGGATCTTGAGTATTTACAAGGCAAGAAAACCAAAGATGCACTAAAACTGTTTGATGAATTGCCTGGGAGAAATGTGGTCTCGTGGAATATTGTGATCCACCACGTTATTGGATTTGGAAATGCAAATGACTTGAATCCTCATCTGGGGTTTTCTTATTGTTGTTGGAAAAGGTGGCTCCAGATGATGTAA 1185 0.5013 MEEATTSSTSSTIMAALSTLSPTTVSNLTHSIISATNHRTHRLALLLSSPTLFSLTLHYLHTLSLHQKTLLIARHLLSSLHTLTRHAAMPPPLSTSMRQRDLDAVLLLLLFCETHNHNPELLEDSFSEWRVNLRRAFREKNLDPLWRGNNKEEVEVAAAAAAVVALPAVEVAVGGKECVICKEEMRVGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRLRLPSDDVFGEIQRLWGVLVKMGGKECGGDGAADFQLPSHERFLIKGKEILWTTPRKTSDSSSLVLACIVVDDEENDYVPFPSPLEFQALAQVFHQKNEAPVHDTALKVAAIRDLEYLQGKKTKDALKLFDELPGRNVVSWNIVIHHVIGFGNANDLNPHLGFSYCCWKRWLQMM 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g01231 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 243 - -
Adu02g01231 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 8 243 - -
Adu02g01231 394 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Adu02g01231 394 Pfam Ring finger domain 176 219 IPR001841 -
Adu02g01231 394 SMART ring_2 178 218 IPR001841 -
Adu02g01231 394 SUPERFAMILY RING/U-box 177 224 - -
Adu02g01231 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 225 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g01231 Adu-Chr2 32617133 32624211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g01231 9 240 C3H Transcription Factor Family AT5G02750 48.529 1.53e-62 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g01231 - - gmx:100818800 279.256