Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g01212 ATGGGTAACTCTCACTCACATCGCAAACACCGTAACTCCCTCTCTCAAAACAATAACTCTTCTTCTTCTATTGCTACTCCTCCACACTATAGATATGGTGCTCATCATTATCCAAAACAACAACACTGTAATAGGACGATGGTGAGCAGCAAGATTTCTTTGCCTTACGGGCGCGTGGACACCACGCTCCGAGAACTCGCTGCCAAGGCCGAAGGCTTCGGACGCTTCGCCATCGGCGGCCTCCATGGTCCGCTATACCATGTCACTAATCTCGCAGATGATGGACCAGGATCACTACGCGATGCATGTCGTAGAAAAGAACCATTATGGATTGTATTTGAGGTTTCAGGCACAATTCATCTGTCATCGTATTTGAATGTATCATCTTACAAGACCATTGACGGCCGGGGCCAAAGGATTAAACTCACCGGTAAAGGGTTGCGGCTGAAGGAATGCGAGCATGTAATAGTGTGCAATTTAGAGTTTGAAGGAGGCAGAGGGCCTGATGTTGATGCCATTCAAATCAAGCCTAACTCAAAGCACATATGGATAGATCGTTGTACTCTCAGTGATTTCGAAGATGGGCTGATAGACATCACCAGAGAAAGCACAGATATTACAATTTCAAGGTGTCATTTTTCTAAGCATGACAAAACAATTCTCATTGGAGCAGATCCCTCACATGTTGGTGATAGATGCATAAGGGTCACCATTCATCATTGCTTCTTCGATGGGACTCGACAGAGGCATCCTCGCGTTCGATTTGCAAAAGTTCATCTGTATAACAATTATACCAGAAACTGGGGCATATATGCTGCTTGTGCGAGTGTGGAGTCCCAGATATTCTCGCAACATAATATTTATGAAGCAGGGCAGAAGAAGGTAGCATTCAAGTACCTTTCTGAGAAGGCAGCAGACAAGGGAGCAGAAGCAAGTGGCCGCATAATATCCGAAGGAGATTTGTTTATAAATGGAACACAATCAGGGCTAATAGCATCTAACAATCTTGAATGCAACAATTTTCATCCTAGGGAACACTATCCGGCATGGACGGTGGAACCTCCTTCACATGATCTAAAACAGGTTCTTCAGCATTGCACTGGATGGCAATCTATGGCGAGGCCATTAGACCAAACGGTTGAACACGGTGCACATGATGAAGCAGTACCTATTTATCCATTCCAAACTCACAGCATTGTAGCCAGTTTGCCTTATGCACGAGTGGACTCCTCCCTCCGAGCACTTGCTGGCTCGGCCGAGGGATTTGGACACTCTGCCATTGGTGGCCTCCGTGGTCCCCTTTATCATGTAACAACTCTAGCAGATGATGGACCGGGGTCGCTGCGTGACGCATGTCGCAGAAAAGATCCTTTGTGGATTGTATTTCAAGTTTCAGGCACAATTCATCTGTCTACATTTTTGAGTGTATCATCTTATAAGACCATCGATGGCCGGGGCCGAAGGATTAAACTCACCGGAAAAGGATTGCGGCTGAAGGAATGTGAGCATGTAATAATTTGTAATTTAGAGTTTGAAGGAGGCAGAGGGCCTGATAGTGATGCCATTCAGATCAAGCCTAATTCGAAGCACATATGGATAGATCGTTGCAGCCTCAGTGATTTCGATGATGGACTCATAGACATCACTAGAGAAAGCACGGATATTACCATTTCAAGGTGTCATTTTTCTAAGCACAACAAAACAATTCTCATCGGAGCAGATCCCTCGCATGTTGGGGATAGGTGCATAAGGGTCACCATTCACCACTGCTTTTTCGATGAGACTCGACAGAGGCATCCTCGTGTTAGATTTGCAAACATACATCTTTACAATAATTATAGCAGAAACTGGGGTATATATGCTGTTTGTGCAAGTGTGGAATCACAGGGCAGAAGAAGGTGGCATTTAAGTATCTTTCTGAAAAGGCAGCAGACAAGGGAGAAGAAGCAAGTGGCCGCATAA 1962 0.4521 MGNSHSHRKHRNSLSQNNNSSSSIATPPHYRYGAHHYPKQQHCNRTMVSSKISLPYGRVDTTLRELAAKAEGFGRFAIGGLHGPLYHVTNLADDGPGSLRDACRRKEPLWIVFEVSGTIHLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIVCNLEFEGGRGPDVDAIQIKPNSKHIWIDRCTLSDFEDGLIDITRESTDITISRCHFSKHDKTILIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRFAKVHLYNNYTRNWGIYAACASVESQIFSQHNIYEAGQKKVAFKYLSEKAADKGAEASGRIISEGDLFINGTQSGLIASNNLECNNFHPREHYPAWTVEPPSHDLKQVLQHCTGWQSMARPLDQTVEHGAHDEAVPIYPFQTHSIVASLPYARVDSSLRALAGSAEGFGHSAIGGLRGPLYHVTTLADDGPGSLRDACRRKDPLWIVFQVSGTIHLSTFLSVSSYKTIDGRGRRIKLTGKGLRLKECEHVIICNLEFEGGRGPDSDAIQIKPNSKHIWIDRCSLSDFDDGLIDITRESTDITISRCHFSKHNKTILIGADPSHVGDRCIRVTIHHCFFDETRQRHPRVRFANIHLYNNYSRNWGIYAVCASVESQGRRRWHLSIFLKRQQTREKKQVAA 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g01212 653 SUPERFAMILY Pectin lyase-like 416 629 IPR011050 -
Adu02g01212 653 MobiDBLite consensus disorder prediction 13 27 - -
Adu02g01212 653 MobiDBLite consensus disorder prediction 1 38 - -
Adu02g01212 653 PANTHER PECTATE LYASE 399 629 - -
Adu02g01212 653 PANTHER PECTATE LYASE 18-RELATED 399 629 IPR045032 GO:0030570
Adu02g01212 653 Pfam Pectate lyase 124 287 IPR002022 -
Adu02g01212 653 Pfam Pectate lyase 474 615 IPR002022 -
Adu02g01212 653 PANTHER PECTATE LYASE 50 375 - -
Adu02g01212 653 PRINTS Pollen allergen Amb family signature 69 86 IPR018082 -
Adu02g01212 653 PRINTS Pollen allergen Amb family signature 271 290 IPR018082 -
Adu02g01212 653 PRINTS Pollen allergen Amb family signature 124 140 IPR018082 -
Adu02g01212 653 SMART pbh1 152 177 IPR006626 -
Adu02g01212 653 SMART pbh1 528 549 IPR006626 -
Adu02g01212 653 SMART pbh1 604 626 IPR006626 -
Adu02g01212 653 SMART pbh1 203 224 IPR006626 -
Adu02g01212 653 SMART pbh1 552 573 IPR006626 -
Adu02g01212 653 SMART pbh1 501 526 IPR006626 -
Adu02g01212 653 SMART pbh1 179 200 IPR006626 -
Adu02g01212 653 Gene3D - 405 643 IPR012334 -
Adu02g01212 653 Gene3D - 56 355 IPR012334 -
Adu02g01212 653 SMART amb_all 445 641 IPR002022 -
Adu02g01212 653 SMART amb_all 81 294 IPR002022 -
Adu02g01212 653 SUPERFAMILY Pectin lyase-like 68 373 IPR011050 -
Adu02g01212 653 PANTHER PECTATE LYASE 18-RELATED 50 375 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g01212 Adu-Chr2 30103555 30109701 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g01212 440 629 Polysaccharide Lyase AT3G55140 80.000 1.25e-111 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g01212 K01728 - ecad:122607709 932.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu02g01212 02 30103555 30109701 Adu02g01212 02 30103555 30109701 ECH