Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g01184 ATGAAAAGACAACGAGATCATCAAGTAATAATGGATAGTAATAGCATTGACTTGGCACAATGTCTAATGCTACTTTCTCATCAAAACCCTAAAGATCAAAGCAAAGTCCACCATTATCATCGTCAGAAACATTTTCGCCCAACGGAATTTGAGTGTAGCACATGCAACCGCAAATTCTCTTCATTTCAAGCCCTTGGTGGTCACAAAGCTAGCCACAAGAAACAAAAGATGGAGAAGAATAACAAAGAAGAAGCCACAACTACTCTCAGCTTAGGAGTAGGGAACAATAATAACGTTTTTATTAACAAACCCAATAAAATGCATGAGTGTTCAATTTGTGGTCAAAGATTCTCTCAAGGGCAAGCACTTGGAGGGCACATGAGAAAGCATAGACTACATGCCAATCAAGAAACGTTTCTAATTCCTTCTATAAACGACGTCGTCCTGGGAAAAATCCCACCAGTTCTAAAGAGATCTAATAGCTTCAGGGTTATGTGTTTGGATTTGAACCTAACACCTCTGCAGAATGATTTAAAGGTATTGTTTGGAAACATGGCACCAAAAGTTGATCCTAGCTGG 579 0.3903 MKRQRDHQVIMDSNSIDLAQCLMLLSHQNPKDQSKVHHYHRQKHFRPTEFECSTCNRKFSSFQALGGHKASHKKQKMEKNNKEEATTTLSLGVGNNNNVFINKPNKMHECSICGQRFSQGQALGGHMRKHRLHANQETFLIPSINDVVLGKIPPVLKRSNSFRVMCLDLNLTPLQNDLKVLFGNMAPKVDPSW 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g01184 193 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 138 IPR013087 -
Adu02g01184 193 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Adu02g01184 193 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Adu02g01184 193 PANTHER ZINC FINGER PROTEIN ZAT5 1 191 - -
Adu02g01184 193 SUPERFAMILY beta-beta-alpha zinc fingers 48 77 IPR036236 -
Adu02g01184 193 SMART c2h2final6 108 130 IPR013087 -
Adu02g01184 193 SMART c2h2final6 50 72 IPR013087 -
Adu02g01184 193 SUPERFAMILY beta-beta-alpha zinc fingers 105 132 IPR036236 -
Adu02g01184 193 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Adu02g01184 193 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 191 - -
Adu02g01184 193 Pfam C2H2-type zinc finger 108 131 - -
Adu02g01184 193 Pfam C2H2-type zinc finger 50 75 - -
Adu02g01184 193 Gene3D Classic Zinc Finger 48 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g01184 Adu-Chr2 28715004 28715582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g01184 1 190 C2H2 Transcription Factor Family AT2G37430 44.845 1.61e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu02g01184 zf-C2H2_6 4.6e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g01184 - - aip:107627118 367.851