Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g01142 ATGGGAGTTAAGCCACAAGAAGTTGAAACAGTAGAGTTCTCAAACCTAATCCGACCTAAAATCCCGGAGGCAAACAATATCACAACCGTATCATCTCCTAAACCGCTACTCACAATAGTCTACACCACTCAACTCACTCCTGATCCTACGCAAGTCAAAGATACTAACAACAACTCCCACCAGGCATATCGGGAAGAACAAATCCTAACCAACACATCACCCGCCAATAAAGCTAGCGAAAAAAAAGCCCGCGGCTCGACATCTACAAAGAGATCTCGTGCAGCAGAGGTCCATAATCTTTCAGAAAGGAGGCGTCGAGATAGAATTAATGAAAGGATGAGAGCTTTGCAAGAACTTATACCTCGGTGCAACAAGTCTAACAAAGCATCCATGCTGGATGAACCAATCGAATACATGAAGTCACTAAAGTTACAAGTACAGATGATGTCCATGGGATGCAGCATGCTACCGATGATGTTCCCCGGAATCCAGCAGTATATATGTGTGTGGTTAGAAGAATTATAA 525 0.4343 MGVKPQEVETVEFSNLIRPKIPEANNITTVSSPKPLLTIVYTTQLTPDPTQVKDTNNNSHQAYREEQILTNTSPANKASEKKARGSTSTKRSRAAEVHNLSERRRRDRINERMRALQELIPRCNKSNKASMLDEPIEYMKSLKLQVQMMSMGCSMLPMMFPGIQQYICVWLEEL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g01142 174 MobiDBLite consensus disorder prediction 83 107 - -
Adu02g01142 174 MobiDBLite consensus disorder prediction 66 82 - -
Adu02g01142 174 Gene3D - 88 151 IPR036638 GO:0046983
Adu02g01142 174 PANTHER TRANSCRIPTION FACTOR PIF1 50 167 - -
Adu02g01142 174 CDD bHLH_AtPIF_like 93 155 - -
Adu02g01142 174 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 160 IPR036638 GO:0046983
Adu02g01142 174 SMART finulus 99 148 IPR011598 GO:0046983
Adu02g01142 174 Pfam Helix-loop-helix DNA-binding domain 97 143 IPR011598 GO:0046983
Adu02g01142 174 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 93 142 IPR011598 GO:0046983
Adu02g01142 174 MobiDBLite consensus disorder prediction 66 107 - -
Adu02g01142 174 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 50 167 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g01142 Adu-Chr2 23894180 23896609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g01142 38 148 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 60.526 3.18e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu02g01142 HLH 8.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g01142 - - csin:114268243 154.451