Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g01116 ATGTGTTCAATTCTCAAATTTCATAGCATATACGGTTCCTTTAAATTCTTTCATTCTAAACTTAACCGGGGTTCCAGTGCTTCAGATAAAACCCCCAAACTGGAACCAAATAGGAATAATCACAATAGGGTAGGGATTTTCTGGGACTTAGATAACAAGCCACCAAACCCAATTCCACCTTATGAAGTTGCCAATAAGCTTAGAATTGTTGCATCTTCATTTGGGGTTGTTAGGCATATGGTAGCTTATGCAAATAGCCACACTTTCAGCAGTGTCCCACACGCTGTCCGGCAGAGGAGGAAAGAGAAGGAGCTGTATAATCGACTGGAGAGCAAGGGCGTCATCAAGCGGAATGAGCCTCATGTTTGCAGGGTTTGTGGGAGAAAGTTCTACACTAATGAGAAGCTTGTTAACCATTTCAAGCAGCTACATGAGAGCGAGCAAACAAAAAGGGTAAACCAAATAGCGTCTGCAAGGGGGAGCCGGAGGGTGAAGTTGGTGGCGAAGTATTCGATGAAGATGGAGAAATATAAGAAGGCTGCAAGGGATATTCTTACTCCAAGAGTAGGGTATGGTTTGGCGGATGAGCTGAAACGCGCAGGATTTTGGGTTCAGACCGTGTTGGATAAGCCAGAGGCTGCGGATCATGCATTGGAAAGTCACATGGTTGATATGATGGATCATAGGAGGGTTGAGTGCATAGTACTTGTGTCTGATGATTATGATTTCGCTAATGTAATAAGGGAAGCGAAGCTACGATGTCTGAAGACAGTTGTCGTTGGGGATACTAGTGATGGTGTATTGAAGAGGATTGCTGATACGTCCTTTTCTTGGGAGGAAATCCTAATGGGGAAAGCTAAAAAGGAGGCTGTATCAGTTGTCGAGAATTGGAAGGATCGTGATATTTTGAAAAGGTTAGAGTGGACATACAATCCAGAGGTGGATAAAAAGAAATACGATCCGGCTGATGTGGTTATTGAAGAATCAGAAGATGAGAATATTGAAGATATTTGTGATAATGTTGATGATGACTATAAGGATGGTGGAGGTGCTTGGTGGGAGTTAGATTCAGATGAAAATGTCACAAATGAACAGACACCAAAAGTATAG 1110 0.4261 MCSILKFHSIYGSFKFFHSKLNRGSSASDKTPKLEPNRNNHNRVGIFWDLDNKPPNPIPPYEVANKLRIVASSFGVVRHMVAYANSHTFSSVPHAVRQRRKEKELYNRLESKGVIKRNEPHVCRVCGRKFYTNEKLVNHFKQLHESEQTKRVNQIASARGSRRVKLVAKYSMKMEKYKKAARDILTPRVGYGLADELKRAGFWVQTVLDKPEAADHALESHMVDMMDHRRVECIVLVSDDYDFANVIREAKLRCLKTVVVGDTSDGVLKRIADTSFSWEEILMGKAKKEAVSVVENWKDRDILKRLEWTYNPEVDKKKYDPADVVIEESEDENIEDICDNVDDDYKDGGGAWWELDSDENVTNEQTPKV 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g01116 369 Pfam NYN domain 193 274 IPR021139 GO:0004540
Adu02g01116 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 149 IPR013087 -
Adu02g01116 369 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 24 362 - -
Adu02g01116 369 CDD PIN_LabA-like 131 262 - -
Adu02g01116 369 PANTHER - 24 362 - -
Adu02g01116 369 Gene3D - 36 282 - -
Adu02g01116 369 ProSitePatterns Zinc finger C2H2 type domain signature. 123 144 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g01116 Adu-Chr2 22471030 22472139 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g01116 25 366 C2H2 Transcription Factor Family AT4G12240 55.398 9.32e-140 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu02g01116 NYN 9.2e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g01116 - - lang:109328008 545.814